Links for TGLU Members
Oxford Med Sci Resources
Researchers' ToolKit - Awesome resource for Oxford University scientists. START HERE
Facilities
Flow Cytometry
Histopathology
Oxford Centre for Histopathology
Sanger Sequencing
Conference & Seminar Rooms
Level 5 - Seminar and conference rooms, Rm5302
Level 6 NDS - Seminar room on Level 6
Level 7 - Seminar and conference rooms
Training
University Safety Office Biological safety training, Fire Safety training, etc.
MRC e-learning HTA course and assessment
University Research Support Good Clinical Practice training and face-to-face sessions
Med Sci Division skills training - Range of courses available from the Medical Sciences Division
Online Tools -Genetic Research
Genetics
New England Biotech's Interactive Tools Various tools to help you design primers, PCR protocols, NGS experiments and much more!
Galaxy Open source, web-based platform for NGS data analysis and processing
GREAT genomic regions enrichment of annotations tool
GSEA Gene Set Enrichment Analysis-free software package for statistical analysis of gene sets
Integrated Genome Viewer high-performance visualization tool for interactive exploration of large, integrated genomic datasets
Oxford University Secure FTP Client Guides
FileZilla a free FTP Client
ARC Advanced Research Computing at Oxford University
Online Tools-Cytometry
Flow Cytometry and Analysis
The FlowClean plugin is designed to help detect and remove any such aberrations in your sample files.
Cytoscape is a free software which can use the SPADE analysis file generated in FlowJo for "visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data." You need to use the .gml file which can be found in the SPADE folder saved to your computer when you use the SPADE plugin
FlowJo have webinars on the first and third Thurs of every month at around 6pm GMT and a library of previous webinars
AutoGate This software was designed to reduce the subjectivity of gating and is available free
Fun Stuff
Nature Publications Immunology Posters - free wall posters and much more!