Publications 2015-2016

EVOLVE-HBV: A cross-sectional study of HBV seroepidemiology in a rural population in South Africa

Anderson M. et al, (2026), International Journal of Infectious Diseases, 171, 108998 - 108998

Epigenetic modulation of stromal cell states underpins pathological tissue niches in Crohn’s disease

Koplev S. et al, (2026), Nature Immunology, 27, 1954 - 1968

Body Composition Changes in Children Living With HIV Initiated on Dolutegravir or Protease Inhibitors in the CHAPAS-4 Trial

Natukunda E. et al, (2026), Pediatric Infectious Disease Journal, 45, 768 - 775

Characterising Hepatitis D Virus in the UK From 2011 to 2021.

Simmons R. et al, (2026), Journal of viral hepatitis, 33

TTC7A deficiency: A retrospective international study on treatment and outcomes from the Inborn Errors Working Party of EBMT.

Prunotto G. et al, (2026), Journal of human immunity, 2

Cochrane Database of Systematic Reviews

(2026)

The impact of different antimicrobial exposures on the gut microbiome in the ARMORD observational study

Peto L. et al, (2026)

Validation of an optimized Oxford Nanopore sequencing workflow versus Illumina for mycobacteria from primary MGIT culture

Baker CS. et al, (2026), Microbiology Spectrum

Neonatal sepsis definitions for randomised–controlled trials: challenges and approaches

Minotti C. et al, (2026), International Journal of Epidemiology, 55

MuSpAn: a toolbox for multiscale spatial analysis

Bull JA. et al, (2026), Nature Communications

Global trends in pleural infection mortality: a WHO-mortality database analysis

Gonnelli F. et al, (2026), ERJ Open Research, 00551 - 2026

Neutralising autoantibodies against IL-10 and HLA-DRB1*01:03 in paediatric patients with inflammatory bowel disease

Gharahdaghi N. et al, (2026), Gut

A mathematical modelling framework for the “stop when you feel better” approach to antibiotic prescribing

Ledda A. et al, (2026)

Rapid glycolytic metabolism underpins mucosal-associated invariant T cell functional responses to innate cytokines

Ryan EK. et al, (2026), The Journal of Immunology, 215

Patient experiences of tissue donation and digital consent support in primary craniospinal tumour research

Mawhinney G. et al, (2026), Supportive Care in Cancer, 34

‘A No‐Brainer, but Not a Simple Decision’: A Qualitative Study of Patient Experiences of Tissue Donation for Research in Rare Craniospinal Tumour Pathways

Mawhinney G. et al, (2026), Health Expectations, 29

Anatomy of the Long Thoracic Nerve in Relation to Thoracotomy for Spinal Approaches: How to Avoid Nerve Injury?

Khadanovich A. et al, (2026), Operative Neurosurgery, 31, 328 - 333

Clinical validation of an optimised metagenomic nanopore sequencing method for detecting viral respiratory pathogens

Sanderson ND. et al, (2026), Journal of Infection, 106839 - 106839

Pleural fluid neutrophil extracellular traps are associated with disease severity and risk of 1-year mortality in pleural infection: an observational, international, multicohort study (TORPIDS-3)

Chu JY. et al, (2026), European Respiratory Journal, 68, 2600113 - 2600113

British unpaid carers’ perspectives on what impacts their resilience when providing end-of-life care at home: a scoping review

Gould SJ. et al, (2026), International Journal of Care and Caring, 10, 509 - 527

Oral step-down, optimal drug, and total duration of antibiotic treatment in African children hospitalised with severe community-acquired pneumonia (PediCAP): a factorial randomised controlled trial

Bielicki JA. et al, (2026), The Lancet, 408, 545 - 557

Pleural Infection in Adults

Bhatnagar M. et al, (2026), Thoracic Surgery Clinics, 36, 293 - 304

Evidence for a relationship between concentrations of nucleos/tide analogue agents and treatment outcome in chronic hepatitis B infection: A systematic review

Sukali G. et al, (2026), Journal of Infection, 93, 106806 - 106806

Time to HIV rebound after infusion of long-acting broadly neutralising antibodies 3BNC117-LS and 10-1074-LS and analytical treatment interruption (the RIO trial): a double-blind, randomised, placebo-controlled trial

Lee MJ. et al, (2026), The Lancet HIV, 13, e527 - e537

Rethinking pleural tuberculosis through the lens of cell-free DNA

Bedawi EO. and Rahman NM., (2026), Thorax, 81, 721 - 722

Global inequities in hepatitis B and C genomic surveillance revealed through an interactive data integration dashboard

Tshiabuila D. et al, (2026), Public Health, 257, 106338 - 106338

Journal update monthly top five

Johnstone K. et al, (2026), Emergency Medicine Journal, 43, 526 - 527

Unravelling HCV diversity and resistance in Viet Nam: a cross-sectional analysis

Le Ngoc C. et al, (2026), The Lancet Regional Health - Western Pacific, 73, 101956 - 101956

Deep immune profiling of endometrial and peripheral blood cells in endometriosis

Kisovar A. et al, (2026), Human Reproduction, 41, 1324 - 1337

An antibiotic chatbot: Evaluation of a retrieval-augmented generation approach for providing guideline-based antimicrobial advice

Eyre DW. et al, (2026), Journal of Infection, 93, 106789 - 106789

Novel surveillance design exploiting network analysis for efficient, rapid detection of emerging Clostridioides difficile strains.

Pople D. et al, (2026), Nature communications, 17

Adapting in-cell ELISA to investigate the localization of hepatitis C virus envelope glycoproteins.

Dimitriadis S. et al, (2026), Microbiology spectrum

PRMT5-mediated intron retention triggers innate and adaptive immunity against cancer.

Blaszczak W. et al, (2026), EMBO molecular medicine

The leading region of many plasmids is adapted for translational efficiency.

Shaw LP. et al, (2026), Nucleic acids research, 54

Identification and Masking of Artefactual and Misleading Within-Host Variants in Deep-Sequencing SARS-CoV-2 Data.

Anker KM. et al, (2026), Molecular biology and evolution

Type I interferon-activated myeloid states are associated with less fibrotic stages in idiopathic pulmonary fibrosis.

Nathwani V. et al, (2026), Cell reports, 45

Symptom burden to characterise, predict, and prevent asthma attacks: a patient-level meta-analysis of randomised trials and translational prospective studies.

Couillard S. et al, (2026), The Lancet. Respiratory medicine

A Snapshot of the UK Blood Donor Plasma Virome: A Retrospective Cross-Sectional Cohort Study.

Kean K. et al, (2026), Journal of medical virology, 98

Hospital sinks and healthcare-associated infection: ecology, transmission, surveillance and mitigation.

Kearney A. et al, (2026), EBioMedicine, 131

Preclinical characterization of immune responses induced by a candidate gonococcal native outer membrane vesicle vaccine

Onofrio I. et al, (2026), mSphere, 11

Widespread Variants of the Highly Polymorphic Plasmodium falciparum Vaccine Candidate Antigen MSP2 Across Sub-Saharan Africa

Zerebinski J. et al, (2026), The Journal of Infectious Diseases

Epithelial-Mesenchymal Transition Induces FAM134A-mediated ER-phagy to Regulate Procollagen Secretion

Di Monaco M. et al, (2026)

Machine learning models to improve targeting of blood culture testing

Forrest-Hammond R. et al, (2026)

Development and external validation of a multivariable regression model for bacteraemia in adults presenting to emergency departments

Samuels THA. et al, (2026)

Evaluating an intervention for healthcare professionals to facilitate family-centred conversations when an adult patient has a serious illness

Dalton LJ. et al, (2026), BMC Medical Education

Evaluation of four large language models on complex, infectious disease case scenarios

Pradhan A. et al, (2026)

Impact of disease-modifying therapies in adults with concomitant psoriatic and metabolic liver disease with integrated immunoprofiling

Gunawardana S. et al, (2026)

Patterns of HIV-1 Viral Load Suppression and Drug Resistance During the Dolutegravir Transition: A Population-based Longitudinal Study

Martin MA. et al, (2026), Clinical Infectious Diseases, 82, e1242 - e1251

Genomic Epidemiology of Multi-Modal ESBL Gene Transmission among Enterobacterales in a Neonatal Unit

Parker MJ. et al, (2026)

Severe Malaria A Research and Trials consortium - Multisite Adaptive Platform (SMAART MAP) Trial Protocol

Maitland K. et al, (2026), Wellcome Open Research, 11, 414 - 414

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Publications 2015-2016