Publications 2011-2012 — Experimental Medicine Division

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Publications 2011-2012

Trends in pneumothorax mortality in England (2004–2023): a population-based observational study

Zhong X. et al, (2026), The Lancet Regional Health - Europe, 64, 101632 - 101632

cute upper gastrointestinal bleeding in the UK: 2022 audit update

Nigam GB. et al, (2026), Gut, 75, 760 - 771

The potential of a centrally implemented system for national surveillance of bloodstream infections in England, compared to current local surveillance, 2023–2024

Cregan J. et al, (2026), Journal of Hospital Infection, 169, 5 - 14

Risk Factors of Metabolic Dysfunction-associated Steatotic Liver Disease in a Cohort of Patients With Chronic Hepatitis B

Kalafateli M. et al, (2026), Clinical Gastroenterology and Hepatology, 24, 701 - 712.e8

The Role of Fibroblast–Epithelial Cross-Talk on the Distribution of Distinct Fibroblast Phenotypes in the Intestinal Crypt

Atkinson G. et al, (2026), Bulletin of Mathematical Biology, 88

Modelling catastrophic extinction in stochastic birth-death process: Analytical insights, estimation, and efficient simulation

Twumasi C., (2026), Computational Statistics & Data Analysis, 215, 108302 - 108302

British Society of Gastroenterology guidelines on colorectal surveillance in inflammatory bowel disease

East JE. et al, (2026), Gut, 75, 442 - 475

ificial intelligence-supported polyp detection (CADe) at colonoscopy reduces the detection of high grade dysplasia and invasive cancer

Henry DX. and East JE., (2026), Endoscopy, 58, 314 - 315

Vaccine effectiveness of a bivalent respiratory syncytial virus (RSV) pre-F vaccine against RSV-associated hospital admission among adults aged 75–79 years in England: a multicentre, test-negative, case–control study

Symes R. et al, (2026), The Lancet Infectious Diseases, 26, 229 - 238

HepB-boost: Implementation of free-of-charge health care worker hepatitis B testing and vaccination at Kilifi County Referral Hospital, Kenya

Downs LO. et al, (2026), International Journal of Infectious Diseases, 164, 108418 - 108418

Environmental impact of computer-aided diagnosis in colonoscopy: a carbon footprint assessment of a prospective study cohort.

Olabintan O. et al, (2026), Endoscopy, 58, 303 - 309

Predicting pyrazinamide resistance in Mycobacterium tuberculosis using a graph convolutional network.

Dissanayake D. et al, (2026), BMC microbiology

Cochrane Database of Systematic Reviews

(2026)

Nanopore long-read-only genome assembly of clinical Enterobacterales isolates is complete and accurate

Nagy D. et al, (2026), Microbial Genomics, 12

Comprehensive mRNA annotation in trypanosomatid parasites

Dobramysl U. and Wheeler RJ., (2026)

Body Composition Changes in Children Living With HIV Initiated on Dolutegravir or Protease Inhibitors in the CHAPAS-4 Trial

Natukunda E. et al, (2026), Pediatric Infectious Disease Journal

Bioinformatic identification of lentivirus transfer plasmid contamination causing false-positive HIV NAT results in a high-throughput molecular screening laboratory

Secret S. et al, (2026), Microbiology Spectrum

Longitudinal Epidemiology and Variant Dynamics of SARS-CoV-2 in Coastal Kenya (2020–2025): Clinical Features and Wave Patterns

Lambisia AW. et al, (2026), Open Forum Infectious Diseases

Python module for programmatic access to TrypTag genome-wide subcellular protein localisation data in Trypanosoma brucei

Dobramysl U. and Wheeler RJ., (2026)

Longitudinal changes in bone mineral density among children living with HIV over 96 weeks following switch to second-line antiretroviral therapy in Uganda

Natukunda E. et al, (2026), PLOS Global Public Health, 6, e0005979 - e0005979

actor integrating transcription and repression of surface antigen genes in African trypanosomes

Berazategui MA. et al, (2026), Proceedings of the National Academy of Sciences, 123

Review of the British Thoracic Society Winter Meeting 26–29 November 2025

Flynn CA. et al, (2026), Thorax

ddressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny

Hunt M. et al, (2026), Nature Methods

Clinical validation of a novel metagenomic nanopore sequencing method for detecting viral respiratory pathogens: diagnostic accuracy study

Sanderson ND. et al, (2026)

Evaluation of an Oxford Nanopore sequencing workflow for mycobacteria from primary MGIT culture

Baker CS. et al, (2026)

Characterisation of bacteria‐induced colitis and its modulation by probiotics in naked mole rats: a new mammalian model for acute inflammatory disease

Hart DW. et al, (2026), The Journal of Pathology

Pharmacokinetics and safety of fosfomycin and flomoxef administered as part of neonatal sepsis treatment (NeoSep1 Part 1)

Bekker A. et al, (2026), Antimicrobial Agents and Chemotherapy, 70

Defining recurrent urinary tract infection and reinfection risk: electronic health record study

Vazquez-Montes MDLA. et al, (2026), BJGP Open, BJGPO.2025.0239 - BJGPO.2025.0239

T cell immunity predicts clinical outcomes on stopping antiretroviral treatment after HIV-specific broadly neutralising antibody therapy

Altaf M. et al, (2026)

Efficacy and acceptability of bowel preparation strategies for inflammatory bowel disease colonoscopy: Systematic review and meta-analysis

Nigam GB. et al, (2026), Endoscopy International Open, 14

Short-Lived Success: Carbapenem-Resistant Enterobacterales Recolonization in Sinks Following Repeated Peroxide-Peracetic Acid-Based Foam Disinfection

Kotay S. et al, (2026)

Toward Integration of Molecular Measures and Artificial Intelligence-Based Assessments With Clinical End Points in Inflammatory Bowel Disease

Reinisch W. et al, (2026), Gastroenterology

Response to Comments on ‘Hepatitis B Virus ( HBV ) Treatment Eligibility in the UK : Retrospective Longitudinal Cohort Data to Explore the Impact of Changes in Clinical Guidelines’

Campbell C. et al, (2026), Journal of Viral Hepatitis, 33

lveolar deadspace and intrapulmonary shunt in healthy individuals and in individuals who have recovered from COVID‐19 infection

Sandhu D. et al, (2026), Experimental Physiology, 111, 556 - 567

dvances in thoracic ultrasound

Addala DN. et al, (2026), European Respiratory Journal, 67, 2500827 - 2500827

Eligibility for hepatitis B virus (HBV) treatment and prevalence of drug resistance in a Ugandan population cohort

Lumley SF. et al, (2026), Journal of Infection, 92, 106682 - 106682

Voices from the frontline: how global funding cuts are reshaping the viral hepatitis response

Delphin M. et al, (2026), The Lancet Gastroenterology & Hepatology

Rapamycin Exerts Its Geroprotective Effects in the Ageing Human Immune System by Enhancing Resilience Against DNA Damage

Kell L. et al, (2026), Aging Cell, 25

Ultrasound of lung parenchyma—current state and future

Elsheikh A. et al, (2026), British Journal of Radiology, 99, 195 - 205

CE2 inhibition ELISA is an effective surrogate for SARS-CoV-2 live virus neutralisation

Tipton T. et al, (2026), Vaccine, 72, 128123 - 128123

Real-World Effectiveness and Safety of Single Inhaler Triple Therapy with Beclometasone/ Formoterol/ Glycopyrronium in Moderate to Severe Asthma: TriMaximize Study

Gessner C. et al, (2026), Journal of Asthma and Allergy, Volume 19, 1 - 21

LARUM: Active One Health surveillance in LMICs to monitor and predict Antimicrobial Resistance Using Metagenomics – a cross-sectional study protocol

van der Sande MAB. et al, (2026), BMJ Open, 16, e107465 - e107465

Professional Standards in Thoracic Ultrasound – EFSUMB Position Paper

Laursen CB. et al, (2026), Ultraschall in der Medizin - European Journal of Ultrasound, 47, 42 - 50

Micro-elimination of Hepatitis C virus (HCV) infection in the General Population Cohort in rural Uganda: Long-term follow-up to assess feasibility and outcomes of a screening and treatment intervention

Mugisha J. et al, (2026), Journal of Clinical Virology, 182, 105911 - 105911

Magnetic resonance enterography to predict disabling disease in newly diagnosed Crohn's disease: the METRIC-EF multivariable prediction model, multicentre diagnostic inception cohort study.

Kumar S. et al, (2026), Health technology assessment (Winchester, England), 30, 1 - 72

Switching to twice-yearly depemokimab from mepolizumab/benralizumab in severe asthma: A multicenter, randomized, double-blind, Phase 3A Clinical Trial (NIMBLE).

Chupp G. et al, (2026), American journal of respiratory and critical care medicine

Evaluating Asthma Clinical Remission with Inhaled Therapy: Post Hoc Analyses of CAPTAIN.

Oppenheimer J. et al, (2026), Advances in therapy, 43, 729 - 749

Treatable traits and treatment options in asthma.

Kanabar SS. et al, (2026), Respiratory medicine

Patient and clinician views on inpatient antibiotic shared decision-making: a qualitative study.

Roleston C. et al, (2026), JAC-antimicrobial resistance, 8

Bowel Urgency in Crohn's Disease: Effects of Mirikizumab in a Randomized Controlled Phase 3 Study.

Jairath V. et al, (2026), Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association, 24, 463 - 473.e5