Publications 2019-2020

Trends in pneumothorax mortality in England (2004–2023): a population-based observational study

Zhong X. et al, (2026), The Lancet Regional Health - Europe, 64, 101632 - 101632

Cochrane Database of Systematic Reviews

(2026)

Long-read sequencing of Mycobacterial tuberculosis is comparable to short-read sequencing for antimicrobial resistance prediction and epidemiological studies

Colpus M. et al, (2026)

Real-time modelling of the SARS-CoV-2 pandemic in England 2020–2023: a challenging data integration

Birrell PJ. et al, (2026), Journal of the Royal Statistical Society Series A: Statistics in Society, 189, 898 - 922

Bioinformatic identification of lentivirus transfer plasmid contamination causing false-positive HIV NAT results in a high-throughput molecular screening laboratory

Secret S. et al, (2026), Microbiology Spectrum, 14

Voices from the frontline: how global funding cuts are reshaping the viral hepatitis response

Delphin M. et al, (2026), The Lancet Gastroenterology & Hepatology, 11, 269 - 271

Characterisation of bacteria‐induced colitis and its modulation by probiotics in naked mole rats: a new mammalian model for acute inflammatory disease

Hart DW. et al, (2026), The Journal of Pathology, 268, 493 - 511

Vibrotactile positional therapy for the treatment of positional obstructive sleep apnoea: a multicentre, randomised controlled trial

Kelly JL. et al, (2026), Thorax, 81, 370 - 379

Towards the endgame: achieving elimination of viral hepatitis in England

Mandal S. et al, (2026), The Lancet Microbe, 7, 101332 - 101332

Toward Integration of Molecular Measures and Artificial Intelligence-Based Assessments With Clinical End Points in Inflammatory Bowel Disease

Reinisch W. et al, (2026), Gastroenterology, 170, 686 - 703

Acute upper gastrointestinal bleeding in the UK: 2022 audit update

Nigam GB. et al, (2026), Gut, 75, 760 - 771

Protective Role for Itaconate During Inhaled Allergen Challenge.

Albers GJ. et al, (2026), Allergy, 81, 1099 - 1110

African-specific genetic loci determine iron status and risk of severe malaria and bacteremia in African children.

Muriuki JM. et al, (2026), Nature communications

Therapeutic manipulation and spatial quantification of the tumor microenvironment in colorectal cancer.

Mulholland-Illingworth EJ. et al, (2026), iScience, 29

Exploring Nurses' Practices in Supporting Sexual Wellbeing of People Living With Inflammatory Bowel Disease: An International Qualitative Study.

Wakai S. et al, (2026), Journal of advanced nursing

Revealing deep evolutionary relationships between RNA viruses using predicted structural models of viral RNA polymerases.

Mönttinen HAM. et al, (2026), Molecular biology and evolution

MAIT cells derived ligands signal via VEGFR2 to promote tissue repair and liver regeneration

Sayaf K. et al, (2026)

Transmission of rifampicin-resistant tuberculosis in Ho Chi Minh City, Viet Nam: a prospective genomic epidemiology study

Spies R. et al, (2026)

Advancing monitoring of antimicrobial resistance trajectories using flexible spatiotemporal modelling: a change-point analysis

Allel K. et al, (2026), Wellcome Open Research, 10, 326 - 326

OxBreaker: species-agnostic pipeline for the analysis of outbreaks using nanopore sequencing

Reding C. et al, (2026)

‘EVOLVE-HBV’: A retrospective cross-sectional study to quantify and characterise HBV infection, exposure, immunity and susceptibility in a rural population in KwaZulu-Natal, South Africa

Anderson M. et al, (2026)

Identification of transporters essential for survival of Leishmania promastigotes in the digestive tract of sand flies

Sádlová J. et al, (2026), PLOS Pathogens, 22, e1014049 - e1014049

Research without borders: advancing equitable global partnerships to accelerate HBV elimination efforts

Batbold E. et al, (2026), Nature Reviews Gastroenterology & Hepatology

Longitudinal Epidemiology and Variant Dynamics of SARS-CoV-2 in Coastal Kenya (2020–2025): Clinical Features and Wave Patterns

Lambisia AW. et al, (2026), Open Forum Infectious Diseases, 13

Predicting pyrazinamide resistance in Mycobacterium tuberculosis using a graph convolutional network

Dissanayake D. et al, (2026), BMC Microbiology, 26

Vaccine effectiveness of a bivalent respiratory syncytial virus (RSV) pre-F vaccine against RSV-associated hospital admission among adults aged 75–79 years in England: a multicentre, test-negative, case–control study

Symes R. et al, (2026), The Lancet Infectious Diseases, 26, 229 - 238

Risk Factors of Metabolic Dysfunction-associated Steatotic Liver Disease in a Cohort of Patients With Chronic Hepatitis B

Kalafateli M. et al, (2026), Clinical Gastroenterology and Hepatology, 24, 701 - 712.e8

Modelling catastrophic extinction in stochastic birth-death process: Analytical insights, estimation, and efficient simulation

Twumasi C., (2026), Computational Statistics & Data Analysis, 215, 108302 - 108302

HepB-boost: Implementation of free-of-charge health care worker hepatitis B testing and vaccination at Kilifi County Referral Hospital, Kenya

Downs LO. et al, (2026), International Journal of Infectious Diseases, 164, 108418 - 108418

Patterns of testing and the high burden of iron deficiency anaemia in cirrhosis: a national cohort study

Maynard S. et al, (2026), Blood Red Cells & Iron, 100070 - 100070

Artificial intelligence-supported polyp detection (CADe) at colonoscopy reduces the detection of high grade dysplasia and invasive cancer

Henry DX. and East JE., (2026), Endoscopy, 58, 314 - 315

A National Evaluation of Intercostal Chest Drain Removal Strategies

Veale N. et al, (2026), CHEST, 169, 849 - 858

The potential of a centrally implemented system for national surveillance of bloodstream infections in England, compared to current local surveillance, 2023–2024

Cregan J. et al, (2026), Journal of Hospital Infection, 169, 5 - 14

The Role of Fibroblast–Epithelial Cross-Talk on the Distribution of Distinct Fibroblast Phenotypes in the Intestinal Crypt

Atkinson G. et al, (2026), Bulletin of Mathematical Biology, 88

British Society of Gastroenterology guidelines on colorectal surveillance in inflammatory bowel disease

East JE. et al, (2026), Gut, 75, 442 - 475

Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny

Hunt M. et al, (2026), Nature Methods, 23, 653 - 662

Optimising Primary thErapy in pRimAry biliary cholangitis (OPERA): protocol for a randomised, double-blind, placebo-controlled trial of enhanced primary therapy with obeticholic acid.

Dunn S. et al, (2026), BMJ open, 16

A randomized controlled trial of cryoprobe versus forceps for transbronchial biopsy (FROSTBITE-2): Study protocol for a multi-center pragmatic clinical trial.

Thiboutot J. et al, (2026), Contemporary clinical trials, 162

Efficacy and Safety of Obexelimab to Treat IgG4-Related Disease: Protocol for a Global, Randomized, Placebo-Controlled Trial.

Culver EL. et al, (2026), Rheumatology and therapy

Patterns of HIV-1 viral load suppression and drug resistance during the dolutegravir transition: a population-based longitudinal study.

Martin MA. et al, (2026), Clinical infectious diseases : an official publication of the Infectious Diseases Society of America

Pleural Manometry in Tension Pneumothorax: A Step in Physiologic Precision.

Elsheikh A. and Rahman NM., (2026), Chest, 169, 589 - 591

Self-supervised Monocular Depth and Pose Estimation for Endoscopy with Latent Priors.

Xu Z. et al, (2026), IEEE transactions on medical imaging, PP

Evaluation of the Long-Term Safety of Avacopan in Antineutrophil Cytoplasmic Antibody-Associated Vasculitis in the Real World (AvacoStar): Protocol for a Noninterventional Prospective Cohort Study.

Jayne DRW. et al, (2026), JMIR research protocols, 15

Misconceptions of Traits to Predict Response to Inhaled Corticosteroid and Bronchodilator Therapies in Asthma: A Narrative Review.

Brusselle G. et al, (2026), Pulmonary therapy, 12, 57 - 78

Reshaping study design for faster extrapolation-based drug approval in pediatric inflammatory bowel diseases: An ESPGHAN-NASPGHAN position paper.

Turner D. et al, (2026), Journal of pediatric gastroenterology and nutrition, 82, 867 - 894

A Normal UCEIS Is Zero: A Score Divided by a Common Language.

Blackwell J. et al, (2026), Gastroenterology, 170, 452 - 455

Point-of-care ultrasound in emergency presentations of dyspnoea: some light from the darkness.

Addala DN. and Rahman NM., (2026), The European respiratory journal, 67

Tobacco Smoke Exposure From Prenatal To Adolescent Periods Drives IBD Pathogenesis: Dynamic DNA Methylation Signatures Across Lifespan Stages.

Zhang H. et al, (2026), Advanced science (Weinheim, Baden-Wurttemberg, Germany), 13

Environmental impact of computer-aided diagnosis in colonoscopy: a carbon footprint assessment of a prospective study cohort.

Olabintan O. et al, (2026), Endoscopy, 58, 303 - 309

Acceptability and feasibility of biomarkers of airway eosinophilic inflammation for the management of preschool wheeze: a qualitative study.

Perikleous A. et al, (2026), Archives of disease in childhood, 111, 347 - 355

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Publications 2019-2020