Publications 2017-2018
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Nanopore metagenomic sequencing of full length human metapneumovirus (HMPV) within a unique sub-lineage
Xu Y. et al, (2018)
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Data from an electronic health informatics pipeline to describe clearance dynamics of Hepatitis B surface antigen (HBsAg) and e-Antigen (HBeAg) in chronic HBV infection
Downs L. et al, (2018)
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Antiviral activity of bone morphogenetic proteins and activins
Eddowes LA. et al, (2018), Nature Microbiology, 4, 339 - 351
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Analysis of the Gut Microbiome of Rural and Urban Healthy Indians Living in Sea Level and High Altitude Areas
Das B. et al, (2018), Scientific Reports, 8
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Hepatitis virus (HCV) diagnosis and access to treatment in a UK cohort
Adland E. et al, (2018), BMC Infectious Diseases, 18
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Nanopore sequencing and full genome de novo assembly of human cytomegalovirus TB40/E reveals clonal diversity and structural variations
Karamitros T. et al, (2018), BMC Genomics, 19
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Oxford Screening CSF and Respiratory samples (‘OSCAR’): results of a pilot study to screen clinical samples from a diagnostic microbiology laboratory for viruses using Illumina next generation sequencing
Sharp C. et al, (2018), BMC Research Notes, 11
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Strategies for Detecting Colorectal Cancer in Patients with Inflammatory Bowel Disease: A Cochrane Systematic Review and Meta-Analysis.
Bye WA. et al, (2018), Am J Gastroenterol, 113, 1801 - 1809
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Scientific Business Abstracts of the 112th Annual Meeting of the Association of Physicians of Great Britain and Ireland
Chauhan A. et al, (2018), QJM: An International Journal of Medicine, 111, 920 - 924
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Never seen before? Opisthorchiasis and Clonorchiasis.
Dietrich CF. et al, (2018), Zeitschrift fur Gastroenterologie, 56, 1513 - 1520
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Single cell RNA-seq reveals profound transcriptional similarity between Barrett’s oesophagus and oesophageal submucosal glands
Owen RP. et al, (2018), Nature Communications, 9
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Promoter methylation of the MGAT3 and BACH2 genes correlates with the composition of the immunoglobulin G glycome in inflammatory bowel disease
Klasić M. et al, (2018), Clinical Epigenetics, 10
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Diagnostic Accuracy of Endoscopic Trimodal Imaging and Chromoendoscopy for Lesion Characterization in Ulcerative Colitis
Vleugels JLA. et al, (2018), Journal of Crohn's and Colitis, 12, 1438 - 1447
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TCR and inflammatory signals tune human MAIT cells to exert specific tissue repair and effector functions
Leng T. et al, (2018)
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Invasive Salmonella exploits divergent immune evasion strategies in infected and bystander dendritic cell subsets.
Aulicino A. et al, (2018), Nat Commun, 9
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Plasma Nuclear Magnetic Resonance Metabolomics Discriminates Between High and Low Endoscopic Activity and Predicts Progression in a Prospective Cohort of Patients With Ulcerative Colitis
Probert F. et al, (2018), Journal of Crohn's and Colitis, 12, 1326 - 1337
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Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)
McNaughton AL. et al, (2018)
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Cannabis, cannabinoids and the endocannabinoid system - is there therapeutic potential for inflammatory bowel disease?
Ambrose TJW. and SIMMONS A., (2018), Journal of Crohn's and Colitis
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MAIT cells contribute to protection against lethal influenza infection in vivo
van Wilgenburg B. et al, (2018), Nature Communications, 9
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Correlation Between Endoscopic and Histological Activity in Ulcerative Colitis Using Validated Indices
Irani NR. et al, (2018), Journal of Crohn's and Colitis, 12, 1151 - 1157
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The role of genetics in Crohn’s disease: how could it influence future therapies?
Geremia A. and Satsangi J., (2018), Expert Review of Gastroenterology & Hepatology, 12, 1075 - 1077
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Memory inflation following adenoviral vaccination depends on IL-21
Gordon CL. et al, (2018), Vaccine, 36, 7011 - 7016
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Multiomics Analyses to Deliver the Most Effective Treatment to Every Patient With Inflammatory Bowel Disease.
Weersma RK. et al, (2018), Gastroenterology, 155, e1 - e4
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Endoscopic ultrasound elastography of small solid pancreatic lesions: a multicenter study.
Ignee A. et al, (2018), Endoscopy, 50, 1071 - 1079
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Pancreatic pseudocyst extending into mediastinum and causing complete dysphagia
Urbonas T. et al, (2018), ANZ Journal of Surgery, 88, E799 - E800
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Purine metabolism controls innate lymphoid cell function and protects against intestinal injury
Crittenden S. et al, (2018), Immunology & Cell Biology, 96, 1049 - 1059
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IBD2020 global forum: results of an international patient survey on quality of care
Irving P. et al, (2018), Intestinal Research, 16, 537 - 545
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High MDR-1 expression by MAIT cells confers resistance to cytotoxic but not immunosuppressive MDR-1 substrates
Fergusson JR. et al, (2018), Clinical and Experimental Immunology, 194, 180 - 191
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Mutational Analysis Identifies Therapeutic Biomarkers in Inflammatory Bowel Disease–Associated Colorectal Cancers
Din S. et al, (2018), Clinical Cancer Research, 24, 5133 - 5142
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Experience of adopting faecal immunochemical testing to meet the NICE colorectal cancer referral criteria for low-risk symptomatic primary care patients in Oxfordshire, UK
Nicholson BD. et al, (2018), Frontline Gastroenterology
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Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease.
Kinchen J. et al, (2018), Cell, 175, 372 - 386.e17
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Interleukin-22 promotes phagolysosomal fusion to induce protection against Salmonella enterica Typhimurium in human epithelial cells
Forbester JL. et al, (2018), Proceedings of the National Academy of Sciences, 115, 10118 - 10123
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Liver cT1 Predicts Clinical Outcomes in Patients with Chronic Liver Disease, Equivalent to Biopsy
(2018), Hepatology
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Polyp-adjacent biopsies no longer required in inflammatory bowel disease
Lahiff C. et al, (2018), Gastrointestinal Endoscopy, 88, 782 - 783
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Humoral and cellular immunity to RSV in infants, children and adults
Green CA. et al, (2018), Vaccine, 36, 6183 - 6190
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The evolutionary landscape of colorectal tumorigenesis
Cross W. et al, (2018), Nature Ecology & Evolution, 2, 1661 - 1672
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Potential of Fecal Calprotectin as an Objective Marker to Discriminate Hospitalized Patients with Acute Severe Colitis from Outpatients with Less Severe Disease
Kedia S. et al, (2018), Digestive Diseases and Sciences, 63, 2747 - 2753
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A novel prognostic model for transplant-free survival in primary sclerosing cholangitis
de Vries EM. et al, (2018), Gut, 67, 1864 - 1869
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Detection of Viral Pathogens With Multiplex Nanopore MinION Sequencing: Be Careful With Cross-Talk
Xu Y. et al, (2018), Frontiers in Microbiology, 9
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Mitochondrial DNA Is a Pro-Inflammatory Damage-Associated Molecular Pattern Released During Active IBD
Boyapati RK. et al, (2018), Inflammatory Bowel Diseases, 24, 2113 - 2122
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Obesity in Inflammatory Bowel Disease: Gains in Adiposity despite High Prevalence of Myopenia and Osteopenia
Bryant R. et al, (2018), Nutrients, 10, 1192 - 1192
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Antibody Concentrations Decrease 14-Fold in Children With Celiac Disease on a Gluten-Free Diet but Remain High at 3 Months
Petroff D. et al, (2018), Clinical Gastroenterology and Hepatology, 16, 1442 - 1449.e5
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Impact of Interferon Lambda 4 Genotype on Interferon‐Stimulated Gene Expression During Direct‐Acting Antiviral Therapy for Hepatitis C
Ramamurthy N. et al, (2018), Hepatology, 68, 859 - 871
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Prolonged Evolution of Virus-Specific Memory T Cell Immunity after Severe Avian Influenza A (H7N9) Virus Infection
Zhao M. et al, (2018), Journal of Virology, 92
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Synergistic activation of pro-inflammatory type-2 CD8+ T lymphocytes by lipid mediators in severe eosinophilic asthma
Hilvering B. et al, (2018), Mucosal Immunology, 11, 1408 - 1419
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How to get the most out of costly Barrett’s oesophagus surveillance
Braden B. and Jones-Morris E., (2018), Digestive and Liver Disease, 50, 871 - 877
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Plasma N-Glycan Signatures Are Associated With Features of Inflammatory Bowel Diseases.
Clerc F. et al, (2018), Gastroenterology, 155, 829 - 843
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A systematic review of hepatitis B virus (HBV) drug and vaccine escape mutations in Africa: A call for urgent action
Mokaya J. et al, (2018), PLOS Neglected Tropical Diseases, 12, e0006629 - e0006629
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Characterization of hepatitis C virus resistance to grazoprevir reveals complex patterns of mutations following on-treatment breakthrough that are not observed at relapse
Bonsall D. et al, (2018), Infection and Drug Resistance, Volume 11, 1119 - 1135
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A systematic review of hepatitis B virus (HBV) drug and vaccine escape mutations in Africa: A call for urgent action.
Mokaya J. et al, (2018), PLoS Negl Trop Dis, 12