Publications 2017-2018

Trends in pneumothorax mortality in England (2004–2023): a population-based observational study

Zhong X. et al, (2026), The Lancet Regional Health - Europe, 64, 101632 - 101632

Cochrane Database of Systematic Reviews

(2026)

Real-time modelling of the SARS-CoV-2 pandemic in England 2020–2023: a challenging data integration

Birrell PJ. et al, (2026), Journal of the Royal Statistical Society Series A: Statistics in Society, 189, 898 - 922

Characterisation of bacteria‐induced colitis and its modulation by probiotics in naked mole rats: a new mammalian model for acute inflammatory disease

Hart DW. et al, (2026), The Journal of Pathology, 268, 493 - 511

Acute upper gastrointestinal bleeding in the UK: 2022 audit update

Nigam GB. et al, (2026), Gut, 75, 760 - 771

Toward Integration of Molecular Measures and Artificial Intelligence-Based Assessments With Clinical End Points in Inflammatory Bowel Disease

Reinisch W. et al, (2026), Gastroenterology, 170, 686 - 703

Vibrotactile positional therapy for the treatment of positional obstructive sleep apnoea: a multicentre, randomised controlled trial

Kelly JL. et al, (2026), Thorax, 81, 370 - 379

Voices from the frontline: how global funding cuts are reshaping the viral hepatitis response

Delphin M. et al, (2026), The Lancet Gastroenterology & Hepatology, 11, 269 - 271

Therapeutic manipulation and spatial quantification of the tumor microenvironment in colorectal cancer.

Mulholland-Illingworth EJ. et al, (2026), iScience, 29

MAIT cells derived ligands signal via VEGFR2 to promote tissue repair and liver regeneration

Sayaf K. et al, (2026)

Transmission of rifampicin-resistant tuberculosis in Ho Chi Minh City, Viet Nam: a prospective genomic epidemiology study

Spies R. et al, (2026)

Advancing monitoring of antimicrobial resistance trajectories using flexible spatiotemporal modelling: a change-point analysis

Allel K. et al, (2026), Wellcome Open Research, 10, 326 - 326

OxBreaker: species-agnostic pipeline for the analysis of outbreaks using nanopore sequencing

Reding C. et al, (2026)

Identification of transporters essential for survival of Leishmania promastigotes in the digestive tract of sand flies

Sádlová J. et al, (2026), PLOS Pathogens, 22, e1014049 - e1014049

Research without borders: advancing equitable global partnerships to accelerate HBV elimination efforts

Batbold E. et al, (2026), Nature Reviews Gastroenterology & Hepatology

Predicting pyrazinamide resistance in Mycobacterium tuberculosis using a graph convolutional network

Dissanayake D. et al, (2026), BMC Microbiology

Longitudinal Epidemiology and Variant Dynamics of SARS-CoV-2 in Coastal Kenya (2020–2025): Clinical Features and Wave Patterns

Lambisia AW. et al, (2026), Open Forum Infectious Diseases, 13

Patterns of testing and the high burden of iron deficiency anaemia in cirrhosis: a national cohort study

Maynard S. et al, (2026), Blood Red Cells & Iron, 100070 - 100070

Vaccine effectiveness of a bivalent respiratory syncytial virus (RSV) pre-F vaccine against RSV-associated hospital admission among adults aged 75–79 years in England: a multicentre, test-negative, case–control study

Symes R. et al, (2026), The Lancet Infectious Diseases, 26, 229 - 238

Risk Factors of Metabolic Dysfunction-associated Steatotic Liver Disease in a Cohort of Patients With Chronic Hepatitis B

Kalafateli M. et al, (2026), Clinical Gastroenterology and Hepatology, 24, 701 - 712.e8

A National Evaluation of Intercostal Chest Drain Removal Strategies

Veale N. et al, (2026), CHEST, 169, 849 - 858

British Society of Gastroenterology guidelines on colorectal surveillance in inflammatory bowel disease

East JE. et al, (2026), Gut, 75, 442 - 475

HepB-boost: Implementation of free-of-charge health care worker hepatitis B testing and vaccination at Kilifi County Referral Hospital, Kenya

Downs LO. et al, (2026), International Journal of Infectious Diseases, 164, 108418 - 108418

Modelling catastrophic extinction in stochastic birth-death process: Analytical insights, estimation, and efficient simulation

Twumasi C., (2026), Computational Statistics & Data Analysis, 215, 108302 - 108302

The potential of a centrally implemented system for national surveillance of bloodstream infections in England, compared to current local surveillance, 2023–2024

Cregan J. et al, (2026), Journal of Hospital Infection, 169, 5 - 14

Artificial intelligence-supported polyp detection (CADe) at colonoscopy reduces the detection of high grade dysplasia and invasive cancer

Henry DX. and East JE., (2026), Endoscopy, 58, 314 - 315

Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny

Hunt M. et al, (2026), Nature Methods, 23, 653 - 662

The Role of Fibroblast–Epithelial Cross-Talk on the Distribution of Distinct Fibroblast Phenotypes in the Intestinal Crypt

Atkinson G. et al, (2026), Bulletin of Mathematical Biology, 88

Efficacy and Safety of Obexelimab to Treat IgG4-Related Disease: Protocol for a Global, Randomized, Placebo-Controlled Trial.

Culver EL. et al, (2026), Rheumatology and therapy

A randomized controlled trial of cryoprobe versus forceps for transbronchial biopsy (FROSTBITE-2): Study protocol for a multi-center pragmatic clinical trial.

Thiboutot J. et al, (2026), Contemporary clinical trials, 162

Evaluation of the Long-Term Safety of Avacopan in Antineutrophil Cytoplasmic Antibody-Associated Vasculitis in the Real World (AvacoStar): Protocol for a Noninterventional Prospective Cohort Study.

Jayne DRW. et al, (2026), JMIR research protocols, 15

Environmental impact of computer-aided diagnosis in colonoscopy: a carbon footprint assessment of a prospective study cohort.

Olabintan O. et al, (2026), Endoscopy, 58, 303 - 309

Optimising Primary thErapy in pRimAry biliary cholangitis (OPERA): protocol for a randomised, double-blind, placebo-controlled trial of enhanced primary therapy with obeticholic acid.

Dunn S. et al, (2026), BMJ open, 16

Pleural Manometry in Tension Pneumothorax: A Step in Physiologic Precision.

Elsheikh A. and Rahman NM., (2026), Chest, 169, 589 - 591

Self-supervised Monocular Depth and Pose Estimation for Endoscopy with Latent Priors.

Xu Z. et al, (2026), IEEE transactions on medical imaging, PP

Point-of-care ultrasound in emergency presentations of dyspnoea: some light from the darkness.

Addala DN. and Rahman NM., (2026), The European respiratory journal, 67

Reshaping study design for faster extrapolation-based drug approval in pediatric inflammatory bowel diseases: An ESPGHAN-NASPGHAN position paper.

Turner D. et al, (2026), Journal of pediatric gastroenterology and nutrition, 82, 867 - 894

A Normal UCEIS Is Zero: A Score Divided by a Common Language.

Blackwell J. et al, (2026), Gastroenterology, 170, 452 - 455

Tobacco Smoke Exposure From Prenatal To Adolescent Periods Drives IBD Pathogenesis: Dynamic DNA Methylation Signatures Across Lifespan Stages.

Zhang H. et al, (2026), Advanced science (Weinheim, Baden-Wurttemberg, Germany), 13

Acceptability and feasibility of biomarkers of airway eosinophilic inflammation for the management of preschool wheeze: a qualitative study.

Perikleous A. et al, (2026), Archives of disease in childhood, 111, 347 - 355

ERS Congress 2025: highlights from the Thoracic Oncology Assembly.

Heuvelmans MA. et al, (2026), ERJ open research, 12, 1849 - 2025

Misconceptions of Traits to Predict Response to Inhaled Corticosteroid and Bronchodilator Therapies in Asthma: A Narrative Review.

Brusselle G. et al, (2026), Pulmonary therapy, 12, 57 - 78

Patterns of HIV-1 viral load suppression and drug resistance during the dolutegravir transition: a population-based longitudinal study.

Martin MA. et al, (2026), Clinical infectious diseases : an official publication of the Infectious Diseases Society of America

Nanopore long-read-only genome assembly of clinical Enterobacterales isolates is complete and accurate

Nagy D. et al, (2026), Microbial Genomics, 12

Comprehensive mRNA annotation in trypanosomatid parasites

Dobramysl U. and Wheeler RJ., (2026)

Body Composition Changes in Children Living With HIV Initiated on Dolutegravir or Protease Inhibitors in the CHAPAS-4 Trial

Natukunda E. et al, (2026), Pediatric Infectious Disease Journal

Bioinformatic identification of lentivirus transfer plasmid contamination causing false-positive HIV NAT results in a high-throughput molecular screening laboratory

Secret S. et al, (2026), Microbiology Spectrum

A Python module for programmatic access to TrypTag genome-wide subcellular protein localisation data in Trypanosoma brucei

Dobramysl U. and Wheeler RJ., (2026)

Longitudinal changes in bone mineral density among children living with HIV over 96 weeks following switch to second-line antiretroviral therapy in Uganda

Natukunda E. et al, (2026), PLOS Global Public Health, 6, e0005979 - e0005979

A factor integrating transcription and repression of surface antigen genes in African trypanosomes

Berazategui MA. et al, (2026), Proceedings of the National Academy of Sciences, 123

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Publications 2017-2018