Publications 2017-2018

Nanopore metagenomic sequencing of full length human metapneumovirus (HMPV) within a unique sub-lineage

Preprint

Xu Y. et al, (2018)

Data from an electronic health informatics pipeline to describe clearance dynamics of Hepatitis B surface antigen (HBsAg) and e-Antigen (HBeAg) in chronic HBV infection

Journal article

Downs L. et al, (2018)

Antiviral activity of bone morphogenetic proteins and activins

Journal article

Eddowes LA. et al, (2018), Nature Microbiology, 4, 339 - 351

Analysis of the Gut Microbiome of Rural and Urban Healthy Indians Living in Sea Level and High Altitude Areas

Journal article

Das B. et al, (2018), Scientific Reports, 8

Hepatitis virus (HCV) diagnosis and access to treatment in a UK cohort

Journal article

Adland E. et al, (2018), BMC Infectious Diseases, 18

Nanopore sequencing and full genome de novo assembly of human cytomegalovirus TB40/E reveals clonal diversity and structural variations

Journal article

Karamitros T. et al, (2018), BMC Genomics, 19

Oxford Screening CSF and Respiratory samples (‘OSCAR’): results of a pilot study to screen clinical samples from a diagnostic microbiology laboratory for viruses using Illumina next generation sequencing

Journal article

Sharp C. et al, (2018), BMC Research Notes, 11

Strategies for Detecting Colorectal Cancer in Patients with Inflammatory Bowel Disease: A Cochrane Systematic Review and Meta-Analysis.

Journal article

Bye WA. et al, (2018), Am J Gastroenterol, 113, 1801 - 1809

Scientific Business Abstracts of the 112th Annual Meeting of the Association of Physicians of Great Britain and Ireland

Journal article

Chauhan A. et al, (2018), QJM: An International Journal of Medicine, 111, 920 - 924

Never seen before? Opisthorchiasis and Clonorchiasis.

Journal article

Dietrich CF. et al, (2018), Zeitschrift fur Gastroenterologie, 56, 1513 - 1520

Single cell RNA-seq reveals profound transcriptional similarity between Barrett’s oesophagus and oesophageal submucosal glands

Journal article

Owen RP. et al, (2018), Nature Communications, 9

Promoter methylation of the MGAT3 and BACH2 genes correlates with the composition of the immunoglobulin G glycome in inflammatory bowel disease

Journal article

Klasić M. et al, (2018), Clinical Epigenetics, 10

Diagnostic Accuracy of Endoscopic Trimodal Imaging and Chromoendoscopy for Lesion Characterization in Ulcerative Colitis

Journal article

Vleugels JLA. et al, (2018), Journal of Crohn's and Colitis, 12, 1438 - 1447

TCR and inflammatory signals tune human MAIT cells to exert specific tissue repair and effector functions

Journal article

Leng T. et al, (2018)

Invasive Salmonella exploits divergent immune evasion strategies in infected and bystander dendritic cell subsets.

Journal article

Aulicino A. et al, (2018), Nat Commun, 9

Plasma Nuclear Magnetic Resonance Metabolomics Discriminates Between High and Low Endoscopic Activity and Predicts Progression in a Prospective Cohort of Patients With Ulcerative Colitis

Journal article

Probert F. et al, (2018), Journal of Crohn's and Colitis, 12, 1326 - 1337

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)

Journal article

McNaughton AL. et al, (2018)

Cannabis, cannabinoids and the endocannabinoid system - is there therapeutic potential for inflammatory bowel disease?

Journal article

Ambrose TJW. and SIMMONS A., (2018), Journal of Crohn's and Colitis

MAIT cells contribute to protection against lethal influenza infection in vivo

Journal article

van Wilgenburg B. et al, (2018), Nature Communications, 9

Correlation Between Endoscopic and Histological Activity in Ulcerative Colitis Using Validated Indices

Journal article

Irani NR. et al, (2018), Journal of Crohn's and Colitis, 12, 1151 - 1157

The role of genetics in Crohn’s disease: how could it influence future therapies?

Journal article

Geremia A. and Satsangi J., (2018), Expert Review of Gastroenterology & Hepatology, 12, 1075 - 1077

Memory inflation following adenoviral vaccination depends on IL-21

Journal article

Gordon CL. et al, (2018), Vaccine, 36, 7011 - 7016

Multiomics Analyses to Deliver the Most Effective Treatment to Every Patient With Inflammatory Bowel Disease.

Journal article

Weersma RK. et al, (2018), Gastroenterology, 155, e1 - e4

Endoscopic ultrasound elastography of small solid pancreatic lesions: a multicenter study.

Journal article

Ignee A. et al, (2018), Endoscopy, 50, 1071 - 1079

Pancreatic pseudocyst extending into mediastinum and causing complete dysphagia

Journal article

Urbonas T. et al, (2018), ANZ Journal of Surgery, 88, E799 - E800

Purine metabolism controls innate lymphoid cell function and protects against intestinal injury

Journal article

Crittenden S. et al, (2018), Immunology & Cell Biology, 96, 1049 - 1059

IBD2020 global forum: results of an international patient survey on quality of care

Journal article

Irving P. et al, (2018), Intestinal Research, 16, 537 - 545

High MDR-1 expression by MAIT cells confers resistance to cytotoxic but not immunosuppressive MDR-1 substrates

Journal article

Fergusson JR. et al, (2018), Clinical and Experimental Immunology, 194, 180 - 191

Mutational Analysis Identifies Therapeutic Biomarkers in Inflammatory Bowel Disease–Associated Colorectal Cancers

Journal article

Din S. et al, (2018), Clinical Cancer Research, 24, 5133 - 5142

Experience of adopting faecal immunochemical testing to meet the NICE colorectal cancer referral criteria for low-risk symptomatic primary care patients in Oxfordshire, UK

Journal article

Nicholson BD. et al, (2018), Frontline Gastroenterology

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease.

Journal article

Kinchen J. et al, (2018), Cell, 175, 372 - 386.e17

Interleukin-22 promotes phagolysosomal fusion to induce protection against Salmonella enterica Typhimurium in human epithelial cells

Journal article

Forbester JL. et al, (2018), Proceedings of the National Academy of Sciences, 115, 10118 - 10123

Liver cT1 Predicts Clinical Outcomes in Patients with Chronic Liver Disease, Equivalent to Biopsy

Conference paper

(2018), Hepatology

Polyp-adjacent biopsies no longer required in inflammatory bowel disease

Journal article

Lahiff C. et al, (2018), Gastrointestinal Endoscopy, 88, 782 - 783

Humoral and cellular immunity to RSV in infants, children and adults

Journal article

Green CA. et al, (2018), Vaccine, 36, 6183 - 6190

The evolutionary landscape of colorectal tumorigenesis

Journal article

Cross W. et al, (2018), Nature Ecology & Evolution, 2, 1661 - 1672

Potential of Fecal Calprotectin as an Objective Marker to Discriminate Hospitalized Patients with Acute Severe Colitis from Outpatients with Less Severe Disease

Journal article

Kedia S. et al, (2018), Digestive Diseases and Sciences, 63, 2747 - 2753

A novel prognostic model for transplant-free survival in primary sclerosing cholangitis

Journal article

de Vries EM. et al, (2018), Gut, 67, 1864 - 1869

Detection of Viral Pathogens With Multiplex Nanopore MinION Sequencing: Be Careful With Cross-Talk

Journal article

Xu Y. et al, (2018), Frontiers in Microbiology, 9

Mitochondrial DNA Is a Pro-Inflammatory Damage-Associated Molecular Pattern Released During Active IBD

Journal article

Boyapati RK. et al, (2018), Inflammatory Bowel Diseases, 24, 2113 - 2122

Obesity in Inflammatory Bowel Disease: Gains in Adiposity despite High Prevalence of Myopenia and Osteopenia

Journal article

Bryant R. et al, (2018), Nutrients, 10, 1192 - 1192

Antibody Concentrations Decrease 14-Fold in Children With Celiac Disease on a Gluten-Free Diet but Remain High at 3 Months

Journal article

Petroff D. et al, (2018), Clinical Gastroenterology and Hepatology, 16, 1442 - 1449.e5

Impact of Interferon Lambda 4 Genotype on Interferon‐Stimulated Gene Expression During Direct‐Acting Antiviral Therapy for Hepatitis C

Journal article

Ramamurthy N. et al, (2018), Hepatology, 68, 859 - 871

Prolonged Evolution of Virus-Specific Memory T Cell Immunity after Severe Avian Influenza A (H7N9) Virus Infection

Journal article

Zhao M. et al, (2018), Journal of Virology, 92

Synergistic activation of pro-inflammatory type-2 CD8+ T lymphocytes by lipid mediators in severe eosinophilic asthma

Journal article

Hilvering B. et al, (2018), Mucosal Immunology, 11, 1408 - 1419

How to get the most out of costly Barrett’s oesophagus surveillance

Journal article

Braden B. and Jones-Morris E., (2018), Digestive and Liver Disease, 50, 871 - 877

Plasma N-Glycan Signatures Are Associated With Features of Inflammatory Bowel Diseases.

Journal article

Clerc F. et al, (2018), Gastroenterology, 155, 829 - 843

A systematic review of hepatitis B virus (HBV) drug and vaccine escape mutations in Africa: A call for urgent action

Journal article

Mokaya J. et al, (2018), PLOS Neglected Tropical Diseases, 12, e0006629 - e0006629

Characterization of hepatitis C virus resistance to grazoprevir reveals complex patterns of mutations following on-treatment breakthrough that are not observed at relapse

Journal article

Bonsall D. et al, (2018), Infection and Drug Resistance, Volume 11, 1119 - 1135

A systematic review of hepatitis B virus (HBV) drug and vaccine escape mutations in Africa: A call for urgent action.

Journal article

Mokaya J. et al, (2018), PLoS Negl Trop Dis, 12

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Publications 2017-2018