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Papers

2021

 Antibody status and incidence of SARS-CoV-2 infection in health care workers.

  • Sheila F. Lumley, Denise O’Donnell, Nicole E. Stoesser, Philippa C. Matthews, Alison Howarth, Stephanie B. Hatch, Brian D. Marsden, Stuart Cox, Tim James, Fiona Warren, Liam J. Peck, Thomas G. Ritter, Zoe de Toledo, Laura Warren, David Axten, Richard J. Cornall, E. Yvonne Jones, David I. Stuart, Gavin Screaton, Daniel Ebner, Sarah Hoosdally, Meera Chand, Derrick W. Crook, Anne-Marie O’Donnell, Christopher P. Conlon, Koen B. Pouwels, A. Sarah Walker, Tim E.A. Peto, Susan Hopkins, Timothy M. Walker, Katie Jeffery, David W. Eyre, for the Oxford University Hospitals Staff Testing Group*

https://www.nejm.org/doi/10.1056/NEJMoa2034545 The New England journal of Medicine

The duration, dynamics, and determinants of severe acute respiratory syndrome Coronavirus 2 (SARS-CoV-2) antibody responses in individual healthcare workers. 

  • Sheila F Lumley, Jia Wei, Denise O’Donnell, Nicole E Stoesser, Philippa C Matthews, Alison Howarth, Stephanie B Hatch, Brian D Marsden, Stuart Cox, Tim James, Liam J Peck, Thomas G Ritter, Zoe de Toledo, Richard J Cornall, E Yvonne Jones, David I Stuart, Gavin Screaton, Daniel Ebner, Sarah Hoosdally, Derrick W Crook, Christopher P Conlon, Koen B Pouwels, A Sarah Walker, Tim E A Peto, Timothy M Walker, Katie Jeffery, David W Eyre, Oxford University Hospitals Staff Testing Group

https://academic.oup.com/cid/article/73/3/e699/6064824 Clinical Infectious Diseases

Ten years of population-level genomic Escherichia coli and Klebsiella pneumoniae serotype surveillance informs vaccine development for invasive infections

  • Samuel Lipworth, Karina-Doris Vihta, Kevin K Chau, James Kavanagh, Timothy Davies, Sophie George, Leanne Barker, Ali Vaughan, Monique Andersson, Katie Jeffery, Sarah Oakley, Marcus Morgan, Timothy E A Peto, Derrick W Crook, A Sarah Walker, Nicole Stoesser

https://academic.oup.com/cid/article/73/12/2276/6067638 Clinical Infectious Diseases

Stringent thresholds in SARS-CoV-2 IgG assays lead to under-detection of mild infections.

  • David W. Eyre, Sheila F. Lumley, Denise O’Donnell, Nicole E. Stoesser, Philippa C. Matthews, Alison Howarth, Stephanie B. Hatch, Brian D. Marsden, Stuart Cox, Tim James, Richard J. Cornall, David I. Stuart, Gavin Screaton, Daniel Ebner, Derrick W. Crook, Christopher P. Conlon, Katie Jeffery, Timothy M. Walker & Timothy E. A. Peto 

https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-021-05878-2 BMC Infectious Diseases

Genomic network analysis of environmental and livestock F-type 1 plasmid populations

  • William Matlock, Kevin K. Chau, Manal AbuOun, Emma Stubberfield, Leanne Barker, James Kavanagh, Hayleah Pickford, Daniel Gilson, Richard P. Smith, H. Soon Gweon, Sarah J. Hoosdally, Jeremy Swann, Robert Sebra, Mark J. Bailey, Timothy E. A. Peto, Derrick W. Crook, Muna F. Anjum, Daniel S. Read, A. Sarah Walker, Nicole Stoesser, Liam P. Shaw & REHAB consortium

https://www.nature.com/articles/s41396-021-00926-w#Sec2 The ISME Journal

Diagnosis of SARS-CoV-2 infection with LamPORE, a high-throughput platform combining loop-mediated isothermal amplification and nanopore sequencing.

  • Leon Peto, Gillian Rodger, Daniel P. Carter, Karen L. Osman, Mehmet Yavuz, Katie Johnson, Mohammad Raza, Matthew D. Parker, Matthew D. Wyles, Monique Andersson, Anita Justice, Alison Vaughan, Sarah Hoosdally, Nicole Stoesser, Philippa C. Matthews, David W. Wyre, Timothy E.A. Peto, Miles W. Carroll, Thushan I. de Silva, Derrick W. Crook, Cariad M. Evans, Steven T. Pullan

https://journals.asm.org/doi/10.1128/JCM.03271-20 Journal of Clinical Microbiology