Publications

Samuelsen Ø. et al, (2026), Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases

How to design a ROCI (Response Over Continuous Intervention) randomised trial: guidance and a case study

Quartagno M. et al, (2026), BMC Medical Research Methodology, 26

Risk Factors for Antimicrobial Resistance in Cancer Patients and Cancer Survivors: An Electronic Health Record Study

Hu F. et al, (2026)

Clinical mechanism of ribavirin action in Hepatitis C treatment: insights from the STOPHCV-1 randomised trial

Moradi Marjaneh M. et al, (2026)

Long-read sequencing of Mycobacterial tuberculosis is comparable to short-read sequencing for antimicrobial resistance prediction and epidemiological studies

Colpus M. et al, (2026)

Real-time modelling of the SARS-CoV-2 pandemic in England 2020–2023: a challenging data integration

Birrell PJ. et al, (2026), Journal of the Royal Statistical Society Series A: Statistics in Society, 189, 898 - 922

African-specific genetic loci determine iron status and risk of severe malaria and bacteremia in African children.

Muriuki JM. et al, (2026), Nature communications

Transmission of rifampicin-resistant tuberculosis in Ho Chi Minh City, Viet Nam: a prospective genomic epidemiology study

Spies R. et al, (2026)

Advancing monitoring of antimicrobial resistance trajectories using flexible spatiotemporal modelling: a change-point analysis

Allel K. et al, (2026), Wellcome Open Research, 10, 326 - 326

OxBreaker: species-agnostic pipeline for the analysis of outbreaks using nanopore sequencing

Reding C. et al, (2026)

Unraveling HCV Diversity and Resistance in Viet Nam: Implications for Treatment

Le Ngoc C. et al, (2026)

Identification and Masking of Artefactual and Misleading Within-Host Variants in Deep-Sequencing SARS-CoV-2 Data

Anker KM. et al, (2026)

Quantifying the non-medical costs patients incur to access hepatitis C treatment in Southern Vietnam

Nguyen HA. et al, (2026)

Longitudinal Epidemiology and Variant Dynamics of SARS-CoV-2 in Coastal Kenya (2020–2025): Clinical Features and Wave Patterns

Lambisia AW. et al, (2026), Open Forum Infectious Diseases, 13

Predicting pyrazinamide resistance in Mycobacterium tuberculosis using a graph convolutional network

Dissanayake D. et al, (2026), BMC Microbiology, 26

The potential of a centrally implemented system for national surveillance of bloodstream infections in England, compared to current local surveillance, 2023–2024

Cregan J. et al, (2026), Journal of Hospital Infection, 169, 5 - 14

Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny

Hunt M. et al, (2026), Nature Methods, 23, 653 - 662

Nanopore long-read-only genome assembly of clinical Enterobacterales isolates is complete and accurate

Nagy D. et al, (2026), Microbial Genomics, 12

Body Composition Changes in Children Living With HIV Initiated on Dolutegravir or Protease Inhibitors in the CHAPAS-4 Trial

Natukunda E. et al, (2026), Pediatric Infectious Disease Journal

Longitudinal changes in bone mineral density among children living with HIV over 96 weeks following switch to second-line antiretroviral therapy in Uganda

Natukunda E. et al, (2026), PLOS Global Public Health, 6, e0005979 - e0005979

Clinical validation of a novel metagenomic nanopore sequencing method for detecting viral respiratory pathogens: diagnostic accuracy study

Sanderson ND. et al, (2026)

Validation of an optimised Oxford Nanopore sequencing workflow versus Illumina for mycobacteria from primary MGIT culture

Baker CS. et al, (2026)

Pharmacokinetics and safety of fosfomycin and flomoxef administered as part of neonatal sepsis treatment (NeoSep1 Part 1)

Bekker A. et al, (2026), Antimicrobial Agents and Chemotherapy, 70

Defining recurrent urinary tract infection and reinfection risk: electronic health record study

Vazquez-Montes MDLA. et al, (2026), BJGP Open, BJGPO.2025.0239 - BJGPO.2025.0239

Short-Lived Success: Carbapenem-Resistant Enterobacterales Recolonization in Sinks Following Repeated Peroxide-Peracetic Acid-Based Foam Disinfection

Kotay S. et al, (2026)

ALARUM: Active One Health surveillance in LMICs to monitor and predict Antimicrobial Resistance Using Metagenomics – a cross-sectional study protocol

van der Sande MAB. et al, (2026), BMJ Open, 16, e107465 - e107465

A benchmark of expert-level academic questions to assess AI capabilities

Phan L. et al, (2026), Nature, 649, 1139 - 1146

Biofilm removal in hospital sink drains drives unintended surges in antibiotic resistance

Kotay SM. et al, (2026), npj Antimicrobials and Resistance, 4

The cumulative incidence and infection hospitalization risk of SARS-CoV-2 by variant: a longitudinal study in England

Gaughan C. et al, (2026), American Journal of Epidemiology, 195, 188 - 197

Individual and spatial heterogeneity of praziquantel efficacy against Schistosoma mansoni within the context of repeated mass drug administration

Iacovidou MA. et al, (2026)

Sotrovimab versus usual care in patients admitted to hospital with COVID-19 (RECOVERY): a randomised, controlled, open-label, platform trial

Abani O. et al, (2026), The Lancet Infectious Diseases, 26, 34 - 45

Malaria vaccine protection against intradermal or venous parasites: a randomized phase 2b human challenge trial

Kapulu MC. et al, (2026), Nature Medicine, 32, 178 - 185

Data-Driven Framework to Maximise the Value of Testing in Epidemic Contexts

Fearson E. et al, (2026)

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