Jeffrey Knaggs
Bioinformatician
Recent publications
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An improved catalogue for whole-genome sequencing prediction of bedaquiline resistance inM. tuberculosisusing a reproducible algorithmic approach
Adlard D. et al, (2025)
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Enhancement and validation of the antibiotic resistance prediction performance of a cloud-based genetics processing platform for Mycobacteria
Westhead J. et al, (2024)
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Quantitative drug susceptibility testing for Mycobacterium tuberculosis using unassembled sequencing data and machine learning
(2024), PLOS Computational Biology, 20, e1012260 - e1012260
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MmpR5 protein truncation and bedaquiline resistance in Mycobacterium tuberculosis isolates from South Africa: a genomic analysis.
Roberts LW. et al, (2024), The Lancet. Microbe, 5
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Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny
Hunt M. et al, (2024)