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Publications

Quantitative SARS-CoV-2 anti-spike responses to Pfizer–BioNTech and Oxford–AstraZeneca vaccines by previous infection status

Eyre DW. et al, (2021), Clinical Microbiology and Infection, 27, 1516.e7 - 1516.e14

Genomic network analysis of environmental and livestock F-type plasmid populations

Matlock W. et al, (2021), The ISME Journal, 15, 2322 - 2335

Impact of vaccination on new SARS-CoV-2 infections in the United Kingdom

Pritchard E. et al, (2021), Nature Medicine, 27, 1370 - 1378

Ct threshold values, a proxy for viral load in community SARS-CoV-2 cases, demonstrate wide variation across populations and over time

Walker AS. et al, (2021), eLife, 10

Risk Factors Associated with Carbapenemase-Producing Enterobacterales (CPE) Positivity in the Hospital Wastewater Environment

Park SC. et al, (2020), Applied and Environmental Microbiology, 86

Awareness of Appropriate Antibiotic Use in Primary Care for Influenza-Like Illness: Evidence of Improvement from UK Population-Based Surveys

Pouwels KB. et al, (2020), Antibiotics, 9, 690 - 690

Within-host genomics of SARS-CoV-2

Lythgoe KA. et al, (2020)

Optimised use of Oxford Nanopore Flowcells for Hybrid Assemblies

Lipworth S. et al, (2020)

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

Bush SJ. et al, (2020), GigaScience, 9

Antibiotic Review Kit for Hospitals (ARK-Hospital): study protocol for a stepped-wedge cluster-randomised controlled trial

Walker AS. et al, (2019), Trials, 20

Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia

van Aartsen JJ. et al, (2019), BMC Microbiology, 19

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

Gweon HS. et al, (2019), Environmental Microbiome, 14

DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis

Yang Y. et al, (2019), Bioinformatics, 35, 3240 - 3249

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

De Maio N. et al, (2019), Microbial Genomics, 5

Predictors of recurrence, early treatment failure and death from Staphylococcus aureus bacteraemia: observational analyses within the ARREST trial

Szubert AJ. et al, (2019), Journal of Infection

Adaptation and implementation of the ARK (Antibiotic Review Kit) Intervention to safely and substantially reduce antibiotic use in hospitals: A feasibility study

Cross ELA. et al, (2019), Journal of Hospital Infection

Intervention planning for ARK (Antibiotic Review Kit): a digital and behavioural intervention to safely review and reduce antibiotic prescriptions in acute and general medicine

SANTILLO M. et al, (2019), Journal of Antimicrobial Chemotherapy

Using hospital network-based surveillance for antimicrobial resistance as a more robust alternative to self-reporting

DONKER T. et al, (2019), PLoS ONE

David "DJ'' Weatherall OBITUARY

Peto TE. et al, (2019), AMERICAN JOURNAL OF HUMAN GENETICS, 105, 3 - 6

Scalable Pathogen Pipeline Platform (SP^3): Enabling Unified Genomic Data Analysis with Elastic Cloud Computing

Yang-Turner F. et al, (2019), 2019 IEEE 12th International Conference on Cloud Computing (CLOUD)

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