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ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads

Journal article

Hunt M. et al, (2022), Bioinformatics, 38, 3291 - 3293

Antibody Status and Incidence of SARS-CoV-2 Infection in Health Care Workers

Journal article

Lumley SF. et al, (2021), New England Journal of Medicine, 384, 533 - 540

How quickly can we predict trimethoprim resistance using alchemical free energy methods?

Journal article

Fowler PW., (2020), Interface Focus, 10, 20190141 - 20190141

GenomegaMap: Within-Species Genome-Wide dN/dS Estimation from over 10,000 Genomes

Journal article

Wilson DJ. et al, (2020), Molecular Biology and Evolution, 37, 2450 - 2460

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe

Journal article

Hunt M. et al, (2019), Wellcome Open Research, 4, 191 - 191

DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis

Journal article

Yang Y. et al, (2019), Bioinformatics, 35, 3240 - 3249

Predicting Resistance Is (Not) Futile.

Journal article

Brankin AE. and Fowler PW., (2019), ACS central science, 5, 1312 - 1314

Overcoming Antibiotic Resistance

Journal article

(2019), Cell Host & Microbe, 26, 8 - 11

Scalable Pathogen Pipeline Platform (SP^3): Enabling Unified Genomic Data Analysis with Elastic Cloud Computing

Conference paper

Yang-Turner F. et al, (2019), 2019 IEEE 12th International Conference on Cloud Computing (CLOUD)

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