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Publications

Omicron-associated changes in SARS-CoV-2 symptoms in the United Kingdom.

Vihta KD. et al, (2022), Clin Infect Dis

SARS-CoV-2 antibody trajectories after a single COVID-19 vaccination with and without prior infection.

Wei J. et al, (2022), Nat Commun, 13

Mortality risks associated with empirical antibiotic activity in Escherichia coli bacteraemia: an analysis of electronic health records.

Yoon CH. et al, (2022), J Antimicrob Chemother

Whole genome sequencing reveals hidden transmission of carbapenemase-producing Enterobacterales.

Marimuthu K. et al, (2022), Nature communications, 13

Comparison of R9.4.1/Kit10 and R10/Kit12 Oxford Nanopore flowcells and chemistries in bacterial genome reconstruction

Sanderson N. et al, (2022)

Prediction of Antibiotic Resistance Evolution by Growth Measurement of All Proximal Mutants of Beta-Lactamase.

Feng S. et al, (2022), Molecular biology and evolution, 39

An Observational Cohort Study on the Incidence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection and B.1.1.7 Variant Infection in Healthcare Workers by Antibody and Vaccination Status

Lumley SF. et al, (2022), Clinical Infectious Diseases, 74, 1208 - 1219

Hospital outbreak of carbapenem-resistant Enterobacterales associated with a bla OXA-48 plasmid carried mostly by Escherichia coli ST399.

Ledda A. et al, (2022), Microbial genomics, 8

Systematic review of wastewater surveillance of antimicrobial resistance in human populations.

Chau KK. et al, (2022), Environ Int, 162

Antibody responses and correlates of protection in the general population after two doses of the ChAdOx1 or BNT162b2 vaccines

Wei J. et al, (2022), Nature Medicine

Monitoring populations at increased risk for SARS-CoV-2 infection in the community using population-level demographic and behavioural surveillance

Pritchard E. et al, (2022), The Lancet Regional Health - Europe, 13

Mortality risks associated with empirical antibiotic activity in E. coli bacteraemia: an analysis of electronic health records

Yoon CH. et al, (2022)

Tocilizumab for treatment of SARS-CoV-2 infection at home: A case report.

McGlen SE. et al, (2022), Acute Med, 21, 53 - 55

The challenge of limited vaccine supplies: impact of prior infection on anti-spike IgG antibody trajectories after a single COVID-19 vaccination

Wei J. et al, (2021)

Tracking the Emergence of SARS-CoV-2 Alpha Variant in the United Kingdom

Walker AS. et al, (2021), New England Journal of Medicine

Antimicrobial resistance in commensal opportunistic pathogens isolated from non-sterile sites can be an effective proxy for surveillance in bloodstream infections.

Vihta K-D. et al, (2021), Scientific reports, 11

A haemagglutination test for rapid detection of antibodies to SARS-CoV-2

Townsend A. et al, (2021), Nature Communications, 12

Anti-spike antibody response to natural SARS-CoV-2 infection in the general population

Wei J. et al, (2021), Nature Communications, 12

Genomic epidemiology and longitudinal sampling of ward wastewater environments and patients reveals complexity of the transmission dynamics of blaKPC-carbapenemase-producing Enterobacterales in a hospital setting

Stoesser N. et al, (2021)

Ten-year longitudinal molecular epidemiology study of Escherichia coli and Klebsiella species bloodstream infections in Oxfordshire, UK

Lipworth S. et al, (2021), Genome Medicine, 13

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