Author Correction: The plasmidome associated with Gram-negative bloodstream infections: a large-scale observational study using complete plasmid assemblies.
Journal article
Lipworth S. et al, (2024), Nature communications, 15
Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencing
Preprint
Sanderson ND. et al, (2024)
Comparison of direct cDNA and PCR-cDNA Nanopore sequencing ofEscherichia coliisolates
Preprint
Rodger G. et al, (2024)
Global genomic epidemiology ofblaGES-5carbapenemase-associated integrons
Preprint
Matlock W. et al, (2024)
Model-based evaluation of admission screening strategies for the detection and control of carbapenemase-producing Enterobacterales in the English hospital setting.
Journal article
Pople D. et al, (2023), BMC Med, 21
A new variant of the colistin resistance gene MCR-1 with co-resistance to β-lactam antibiotics reveals a potential novel antimicrobial peptide.
Journal article
Liang L. et al, (2023), PLoS biology, 21
Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli.
Journal article
Davies TJ. et al, (2023), Microbial genomics, 9
Factors associated with plasmid antibiotic resistance gene carriage revealed using large-scale multivariable analysis
Journal article
Orlek A. et al, (2023), Scientific Reports, 13
Deep learning and single-cell phenotyping for rapid antimicrobial susceptibility detection in Escherichia coli.
Journal article
Zagajewski A. et al, (2023), Communications biology, 6
Erratum: Comparison of R9.4.1/Kit10 and R10/Kit12 Oxford Nanopore flowcells and chemistries in bacterial genome reconstruction.
Journal article
Sanderson ND. et al, (2023), Microbial genomics, 9
Risk of SARS-CoV-2 reinfection during multiple Omicron variant waves in the UK general population
Preprint
Wei J. et al, (2023)
Protection against SARS-CoV-2 Omicron BA.4/5 variant following booster vaccination or breakthrough infection in the UK
Journal article
Wei J. et al, (2023), Nature Communications, 14
High-resolution characterization of short-term temporal variability in the taxonomic and resistome composition of wastewater influent.
Journal article
Chau KK. et al, (2023), Microbial genomics, 9
Improving the representativeness of UK’s national COVID-19 Infection Survey through spatio-temporal regression and post-stratification
Preprint
Pouwels KB. et al, (2023)
Enterobacterales plasmid sharing amongst human bloodstream infections, livestock, wastewater, and waterway niches in Oxfordshire, UK.
Journal article
Matlock W. et al, (2023), eLife, 12
A longitudinal study reveals persistence of antimicrobial resistance on livestock farms is not due to antimicrobial usage alone.
Journal article
Smith RP. et al, (2023), Front Microbiol, 14