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ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads

Journal article

Hunt M. et al, (2022), Bioinformatics, 38, 3291 - 3293

Optimized use of Oxford Nanopore flowcells for hybrid assemblies

Journal article

Lipworth S. et al, (2020), Microbial Genomics

High precision Neisseria gonorrhoeae variant and antimicrobial resistance calling from metagenomic Nanopore sequencing

Journal article

Sanderson ND. et al, (2020), Genome Research, 30, 1354 - 1363

Reconciling the Potentially Irreconcilable? Genotypic and Phenotypic Amoxicillin-Clavulanate Resistance in Escherichia coli

Journal article

Davies TJ. et al, (2020), Antimicrobial Agents and Chemotherapy, 64

Optimised use of Oxford Nanopore Flowcells for Hybrid Assemblies

Journal article

Lipworth S. et al, (2020)

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

Journal article

De Maio N. et al, (2019), Microbial Genomics, 5

Scalable Pathogen Pipeline Platform (SP^3): Enabling Unified Genomic Data Analysis with Elastic Cloud Computing

Conference paper

Yang-Turner F. et al, (2019), 2019 IEEE 12th International Conference on Cloud Computing (CLOUD)

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