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Publications

Machine learning and clinician predictions of antibiotic resistance in Enterobacterales bloodstream infections

Yuan K. et al, (2025), Journal of Infection, 90, 106388 - 106388

The impact of antimicrobial stewardship ward rounds on antimicrobial use and predictors of advice, uptake, and outcomes

Eyre DW. et al, (2025), Journal of Infection, 90, 106419 - 106419

Rapid clinical diagnosis and treatment of common, undetected, and uncultivable bloodstream infections using metagenomic sequencing from routine blood cultures with Oxford Nanopore

Govender KN. and Eyre DW., (2025)

Addition of Macrolide Antibiotics for Hospital Treatment of Community-Acquired Pneumonia

Wei J. et al, (2024), The Journal of Infectious Diseases

Corrigendum to “No evidence of difference in mortality with amoxicillin versus co-amoxiclav for hospital treatment of community-acquired pneumonia” [J Infect 88 (2024) 106161]

Wei J. et al, (2024), Journal of Infection, 89, 106361 - 106361

Predicting individual patient and hospital-level discharge using machine learning

Wei J. et al, (2024), Communications Medicine, 4

Comparison of direct cDNA and PCR-cDNA Nanopore sequencing of RNA from Escherichia coli isolates

Rodger G. et al, (2024), Microbial Genomics, 10

Comparative evaluation of large-language models and purpose-built software for medical record de-identification

Kuo R. et al, (2024)

Predicting future hospital antimicrobial resistance prevalence using machine learning

Vihta K-D. et al, (2024), Communications Medicine, 4

Developing a novel approach to complex evolution of antimicrobial resistance via mobile genetic elements from a persistent environmental biofilm

Mathers A. et al, (2024)

Expanding the use of mathematical modeling in healthcare epidemiology and infection prevention and control.

Grant R. et al, (2024), Infection control and hospital epidemiology, 1 - 6

Global burden of bacterial antimicrobial resistance 1990–2021: a systematic analysis with forecasts to 2050

Naghavi M. et al, (2024), The Lancet, 404, 1199 - 1226

Global, regional, and national incidence and mortality burden of non-COVID-19 lower respiratory infections and aetiologies, 1990-2021: a systematic analysis from the Global Burden of Disease Study 2021.

GBD 2021 Lower Respiratory Infections and Antimicrobial Resistance Collaborators None., (2024), The Lancet. Infectious diseases, 24, 974 - 1002

Comparison of direct cDNA and PCR-cDNA Nanopore sequencing ofEscherichia coliisolates

Rodger G. et al, (2024)

Retrospective analysis of hospital electronic health records reveals unseen cases of acute hepatitis with unknown aetiology in adults in Oxfordshire

Tan CCS. et al, (2023)

Predicting future hospital antimicrobial resistance prevalence using machine learning

Vihta K-D. et al, (2023)

Nanopore sequencing of influenza A and B in Oxfordshire and the United Kingdom, 2022-23

Cane J. et al, (2023)

SARS-CoV-2, influenza A/B and respiratory syncytial virus positivity and association with influenza-like illness and self-reported symptoms, over the 2022/23 winter season in the UK: a longitudinal surveillance cohort

Dietz E. et al, (2023)

Collagen C-propeptide Cleavage Deficiency Increases Bone Mineralization by Increasing Ossification Pathways and Decreasing Collagen Organization and Mineral Particle Thickness

Barnes A. et al, (2023), JOURNAL OF BONE AND MINERAL RESEARCH, 38, 292 - 292

Heterozygous Variants in KIF5B Cause Osteogenesis Imperfecta via Dominant Negative Mechanism

Marom R. et al, (2023), JOURNAL OF BONE AND MINERAL RESEARCH, 38, 98 - 99

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