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Publications

Changes in the incidence of invasive disease due to Streptococcus pneumoniae, Haemophilus influenzae, and Neisseria meningitidis during the COVID-19 pandemic in 26 countries and territories in the Invasive Respiratory Infection Surveillance Initiative: a prospective analysis of surveillance data.

Brueggemann AB. et al, (2021), The Lancet. Digital health, 3, e360 - e370

Molecular diagnostic assays for the detection of common bacterial meningitis pathogens: A narrative review.

Diallo K. et al, (2021), EBioMedicine, 65

The global meningitis genome partnership.

Rodgers E. et al, (2020), The Journal of infection

Prophages and satellite prophages are widespread in Streptococcus and may play a role in pneumococcal pathogenesis.

Rezaei Javan R. et al, (2019), Nature communications, 10

Genomic Analyses of >3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions

van Tonder AJ. et al, (2019), FRONTIERS IN MICROBIOLOGY, 10

Vaccination of Icelandic children with the 10-valent pneumococcal vaccine leads to a significant herd effect among adults in Iceland.

Quirk SJ. et al, (2019), Journal of clinical microbiology

Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis

Javan RR. et al, (2018)

Effect of vaccination on pneumococci isolated from the nasopharynx of healthy children and the middle ear of children with otitis media in Iceland.

Quirk SJ. et al, (2018), Journal of clinical microbiology

Genome sequencing reveals a large and diverse repertoire of antimicrobial peptides

Rezaei Javan R. et al, (2018), Frontiers in Microbiology

Diverse Streptococcus pneumoniae Strains Drive a Mucosal-Associated Invariant T-Cell Response Through Major Histocompatibility Complex class I–Related Molecule–Dependent and Cytokine-Driven Pathways

Kurioka A. et al, (2018), The Journal of Infectious Diseases, 217, 988 - 999

Genome sequencing reveals that Streptococcus pneumoniae possesses a large and diverse repertoire of antimicrobial toxins

Rezaei Javan R. et al, (2017)

Genomic analyses of >3,100 nasopharyngeal pneumococci revealed significant differences between pneumococci recovered in four different geographical regions

van Tonder A. et al, (2017), Frontiers in Microbiology

Correction for van Tonder et al., Genomics Reveals the Worldwide Distribution of Multidrug-Resistant Serotype 6E Pneumococci.

van Tonder AJ. et al, (2016), Journal of clinical microbiology, 54, 1670 - 1670

Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin.

Bogaardt C. et al, (2015), BMC Genomics, 16

Genomics Reveals the Worldwide Distribution of Multidrug-Resistant Serotype 6E Pneumococci.

van Tonder AJ. et al, (2015), J Clin Microbiol, 53, 2271 - 2285

Defining the estimated core genome of bacterial populations using a Bayesian decision model.

van Tonder AJ. et al, (2014), PLoS Comput Biol, 10

Evolution and genetic diversity of the Spain23F-ST81 clone causing adult invasive pneumococcal disease in Barcelona (1990-2012).

Domenech A. et al, (2014), J Antimicrob Chemother, 69, 924 - 931

Streptococcus pneumoniae carriage prevalence in Nepal: evaluation of a method for delayed transport of samples from remote regions and implications for vaccine implementation.

Hanieh S. et al, (2014), PLoS One, 9

Population genetic structure of Streptococcus pneumoniae in Kilifi, Kenya, prior to the introduction of pneumococcal conjugate vaccine

(2013), PLoS ONE, 8

Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974.

Wyres KL. et al, (2013), BMC Genomics, 14

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