Publications
Papers published in 2020
- Antibody testing for COVID-19: A report from the National COVID Scientific Advisory Panel. Adams ER, Ainsworth M, Anand R, et al
https://wellcomeopenresearch.org/articles/5-139/v1
- Investigating the mechanism of impact and differential effect of the Quality Premium scheme on antibiotic prescribing in England: a longitudinal study. Anyanwu PE, Pouwels K, Walker AS, et al.
https://bjgpopen.org/content/4/3/bjgpopen20X101052
- How did a quality premium financial incentive influence antibiotic prescribing in primary care? Views of clinical commissioning group and general practice professionals. Borek AJ, Anthierens S, Allison R, et al
https://academic.oup.com/jac/article/75/9/2681/5861493
- Social and contextual influences on antibiotic prescribing and antimicrobial stewardship: A qualitative study with clinical commissioning group and general practice professionals. Borek AJ, Anthierens S, Allison R, et al
https://www.mdpi.com/2079-6382/9/12/859
- Evaluation of methods for detecting human reads in microbial sequencing datasets. Bush S J, Connor T R, Peto T E A, et al
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000393
- Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines. Bush S J, Foster D, Eyre D W et al.
https://academic.oup.com/gigascience/article/9/2/giaa007/5728470
- Read trimming has minimal effect on bacterial SNP-calling accuracy. Bush S J
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000434
- Genomic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients. Constantinides B, Chau K K, Quan T P et al
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000391
- Ethnically diverse urban transmission networks of Neisseria gonorrhoeae without evidence of HIV serosorting. Dave J, Paul J, PAsvol T J et al
https://sti.bmj.com/content/96/2/106
- An analysis of C.difficile Environmental Contamination During and Following Treatment for C.difficile Infection. Davies K, Mawer D, Walker SA et al.
https://academic.oup.com/ofid/article/7/11/ofaa362/5893473
- Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli. Davies T J, Sheppard A E, Abuoun M, et al
https://journals.asm.org/doi/10.1128/AAC.02026-19
- Differential occupational risks to healthcare workers from SARS-CoV-2: A prospective observational study. Eyre D W, Lumley S F, O’Donnell D, et al
https://elifesciences.org/articles/60675
- Assessing a novel, lab-free, point-of-care test for SARS-CoV-2 (CovidNudge): a diagnostic accuracy study. Gibani M M, Toumazou C, Sohbati M et al
https://www.sciencedirect.com/science/article/pii/S266652472030121X?via%3Dihub
- Quantifying the economic cost of antibiotic resistance and the impact of related interventions: Rapid methodological review, conceptual framework and recommendations for future studies. Jit M, Lin Ng D, Luangasanatip N et al
https://bmcmedicine.biomedcentral.com/articles/10.1186/s12916-020-1507-2
- Multi-label random forest model for tuberculosis drug resistance classification and mutation ranking. Kouchaki S, Yang Y, Lachapelle et al.
https://www.frontiersin.org/articles/10.3389/fmicb.2020.00667/full
- SARS-CoV-2 antibody prevalence, titres and neutralising activity in an antenatal cohort, United Kingdom, 14 April to 15 June 2020. Lumley S F, Eyre D W, McNaughton A, et al
https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2020.25.41.2001721
- Delayed antibiotic prescription by general practitioners in the UK: a stated-choice study. Morrell L, Buchanan J, Roope L S J, et al
https://www.mdpi.com/2079-6382/9/9/608
- Risk factors associated with carbapenemase-producing enterobacterales (CPE) positivity in the hospital wastewater environment. Park S C, Parikh H, Vegesana K, et al
https://journals.asm.org/doi/10.1128/AEM.01715-20
- Performance characteristics of five immunoassays for SARS-CoV-2: a head-to-head benchmark comparison. The National SARS-CoV-2 Serology Assay evaluation Group.
https://www.sciencedirect.com/science/article/pii/S1473309920306344?via%3Dihub
- Awareness of appropriate antibiotic use in primary care for influenza-like illness: evidence of improvement from UK population-based surveys. Pouwels K B, Roope L S J, Buchanan J et al.
https://www.mdpi.com/2079-6382/9/10/690
- Community prevalence of SARS-CoV-2 in England from April to November, 2020: results from the ONS Coronavirus Infection Survey. Pouwels K B, House T, Pritchard E et al.
https://www.sciencedirect.com/science/article/pii/S2468266720302826?via%3Dihub
- Estimating the effect of healthcare-associated infections on excess length of hospital stay using inverse-probability weighted survival curves. Pouwels K B, Vansteelandt S, Batra R et al.
https://academic.oup.com/cid/article/71/9/e415/5734540
- Combining Charlson and Elixhauser scores with varying lookback predicated mortality better than using individual scores. Pritchard E, Fawcett N, Quan T P, et al
https://www.sciencedirect.com/science/article/abs/pii/S0895435620311069?via%3Dihub
- Investigation of the impact of the NICE guidelines regarding antibiotic prophylaxis during invasive dental procedures on the incidence of infective endocarditis in England: an electronic health records study. Quan T P, Muller-Pebody B, Fawcett N, et al
https://bmcmedicine.biomedcentral.com/articles/10.1186/s12916-020-01531-y
- Why do hospital prescribers continue antibiotics when it is safe to stop? Results of a choice experiment survey. Roope L S J, Buchanan J, Morrell L, et al
https://bmcmedicine.biomedcentral.com/articles/10.1186/s12916-020-01660-4
- Reducing expectations for antibiotics in primary care: a randomised experiment to test the response to fear based messages about antimicrobial resistance. Roope L S J, Tonkin-Crine S, Herd N et al
https://bmcmedicine.biomedcentral.com/articles/10.1186/s12916-020-01553-6
- Optimizing COVID-19 surveillance in long-term care facilities: a modelling study. Smith D R M, Duval A, Pouwels K B, et al.
https://bmcmedicine.biomedcentral.com/articles/10.1186/s12916-020-01553-6
- Genomic epidemiology of complex, multi-species, plasmid-borne blaKPC carbapenemase in Enterobacterales in the UK from 2009 to 2014. Stoesser N, Phan H T T, Aiken Z et al
https://journals.asm.org/doi/full/10.1128/AAC.02244-19
- Optimising Interventions for Catheter-Associated Urinary Tract Infections (CAUTI) in Primary, Secondary and Care Home Settings. Wanat M, Borek A J, Atkins L et al.
https://www.mdpi.com/2079-6382/9/7/419
Papers published in 2021
- A genomic epidemiological study shows that prevalence of antimicrobial resistance in Enterobacterales is associated with the livestock host, as well as antimicrobial usage. Abuoun M, Jones H, Stubberfield E et al.
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000630
- Cryo-EM structure and resistance landscape of M. tuberculosis MmpL3: An emergent therapeutic target. Adams O, Deme J C, Parker J L et al
https://www.sciencedirect.com/science/article/pii/S0969212621002173?via%3Dihub
- Prospective trial of different antimicrobial treatment durations for presumptive canine urinary tract infections. Allerton F, Pouwels K B, Bazelle J, et al.
https://bmcvetres.biomedcentral.com/articles/10.1186/s12917-021-02974-y
- Surveillance of Antibacterial Usage during the COVID-19 Pandemic in England, 2020. Andrews A, Budd E L, Hendrick A, et al.
https://www.mdpi.com/2079-6382/10/7/841
- Respiratory antibacterial prescribing in primary care and the COVID-19 pandemic in England, winter season 2020–21. Andrews A, Bou-Antoun S, Guy R, et al.
https://academic.oup.com/jac/article/77/3/799/6460284
- Migration of Escherichia coli and Klebsiella pneumoniae Carbapenemase (KPC)-Producing Enterobacter cloacae through Wastewater Pipework and Establishment in Hospital Sink Waste Traps in a Laboratory Model System. Aranega-Bou P, Ellaby N, Ellington M J, et al.
https://www.mdpi.com/2076-2607/9/9/1868
- A splash-reducing clinical handwash basin reduces droplet-mediated dispersal from a sink contaminated with Gram-negative bacteria in a laboratory model system. Aranega-Bou P, Cornbill C,Verlander N Q, et al.
https://www.sciencedirect.com/science/article/abs/pii/S0195670121001687?via%3Dihub
- Population-level faecal metagenomic profiling as a tool to predict antimicrobial resistance in Enterobacterales isolates causing invasive infections: An exploratory study across Cambodia, Kenya, and the UK. Auguet O, Niehus R, Gweon H, et al.
https://www.sciencedirect.com/science/article/pii/S2589537021001905?via%3Dihub
- Healthcare-associated COVID-19 in England: a national data linkage study. Bhattacharya A, Collin S M, Stimson J, et al.
https://www.sciencedirect.com/science/article/abs/pii/S0163445321004436?via%3Dihub
- Development of an intervention to support the implementation of evidence-based strategies for optimising antibiotic prescribing in general practice. Borek A J, Campbell A, Dent E, et al.
https://implementationsciencecomms.biomedcentral.com/articles/10.1186/s43058-021-00209-7
- Implementing interventions to reduce antibiotic use: a qualitative study in high-prescribing practices. Borek A J, Campbell A, Dent E, et al.
https://bmcprimcare.biomedcentral.com/articles/10.1186/s12875-021-01371-6
- Impact of the COVID-19 pandemic on community antibiotic prescribing and stewardship: A qualitative interview study with general practitioners in England. Borek A J, Maitland K, MeLeod M, et al.
https://www.mdpi.com/2079-6382/10/12/1531
- Preferences for Medical Consultations from Online Providers: Evidence from a Discrete Choice Experiment in the United Kingdom. Buchanan J, Roope L S J, Morrell L, et al.
https://link.springer.com/article/10.1007/s40258-021-00642-8
- Impact of hospital antibiotic use on patient-level risk of death among 36,124,372 acute and medical admissions in England. Budgell E, Davies T J, Donker T, et al.
https://www.sciencedirect.com/science/article/pii/S0163445321006484?via%3Dihub
- Generalizable characteristics of false-positive bacterial variant calls. Bush S J
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000615
- Global antibiotic dosing strategies in hospitalised children: characterising variation and implications for harmonisation of international guidelines. Clements M N, Russell N, Bielicki J A, et al.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0252223
- Following the science? Views from scientists on government advisory boards during the COVID-19 pandemic: a qualitative interview study in five European countries. Colman E, Wanat M, Goossens H, et al.
https://gh.bmj.com/content/6/9/e006928
- Changes in paediatric respiratory infections at a UK teaching hospital 2016-2021; impact of the SARS-CoV-2 pandemic. Lumley S F, Richens N, Lees E, et al.
https://www.sciencedirect.com/science/article/pii/S0163445321005405?via%3Dihub
- Probabilistic transmission models incorporating sequencing data for healthcare-associated Clostridioides difficile outperform heuristic rules and identify strain-specific differences in transmission. Eyre D W, Laager M, Walker A S, et al.
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008417
- Quantitative SARS-CoV-2 anti-spike responses to Pfizer–BioNTech and Oxford–AstraZeneca vaccines by previous infection status. Eyre D W, Lumley S F, Wei J. et al.
https://www.sciencedirect.com/science/article/pii/S1198743X21002895?via%3Dihub
- Stringent thresholds in SARS-CoV-2 IgG assays lead to under-detection of mild infections. Eyre D W, Lumley S F, O’Donnell D, et al.
https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-021-05878-2
- COVID-19 vaccine coverage in health-care workers in England and effectiveness of BNT162b2 mRNA vaccine against infection (SIREN): a prospective, multicentre, cohort study. Hall V J, Foulkes S, Saei A, et al.
https://www.sciencedirect.com/science/article/pii/S014067362100790X?via%3Dihub
- Feasibility and Acceptability of Community Coronavirus Disease 2019 Testing Strategies (FACTS) in a University Setting. Hirst J, Logan M, Fanshawe T R, et al.
https://academic.oup.com/ofid/article/8/12/ofab495/6380918
- Surveillance of Antibacterial Usage during the COVID-19 Pandemic in England. Andrews A, Budd E L, Hendrick A, et al.
https://www.mdpi.com/2079-6382/10/7/841
- Utility of Whole Genome Sequencing in Assessing and Enhancing Partner Notification of Neisseria gonorrhoeae Infection. Kong L Y, Wilson J D, Moura I B, et al.
- Probabilistic modelling of effects of antibiotics and calendar time on transmission of healthcare-associated infection. Laager M, Cooper B S, Eyre D W, et al.
https://www.nature.com/articles/s41598-021-00748-y
- Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infectivity by Viral Load, S Gene Variants and Demographic Factors, and the Utility of Lateral Flow Devices to Prevent Transmission. Lee L Y W, Rozmanowski S, Pang M, et al.
https://academic.oup.com/cid/article/74/3/407/6273394
- Ten years of population-level genomic Escherichia coli and Klebsiella pneumoniae serotype surveillance informs vaccine development for invasive infections. Lipworth S, Vihta K, Chau K K, et al.
https://academic.oup.com/cid/article/74/3/407/6273394
- Epidemiology of Mycobacterium abscessus in England: an observational study. Lipworth S, Hough N, Weston N, et al.
https://www.sciencedirect.com/science/article/pii/S2666524721001282?via%3Dihub
- Antimicrobial resistance genes and clonal success in Escherichia coli isolates causing bloodstream infection. Lipworth S, Peto T EA, Crook D W, et al.
https://www.sciencedirect.com/science/article/pii/S2666524721001518?via%3Dihub
- Ten-year longitudinal molecular epidemiology study of Escherichia coli and Klebsiella species bloodstream infections in Oxfordshire, UK. Lipworth S, Vihta K, Barker L, et al.
https://genomemedicine.biomedcentral.com/articles/10.1186/s13073-021-00947-2
- The Duration, Dynamics, and Determinants of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Antibody Responses in Individual Healthcare Workers. Lumley S F, Wei J, O’Donnell D, et al.
https://academic.oup.com/cid/article/73/3/e699/6064824
- Antibody Status and Incidence of SARS-CoV-2 Infection in Health Care Workers. Lumley S F, O’Donnell D, Stoesser N E, et al.
https://www.nejm.org/doi/10.1056/NEJMoa2034545
- Epidemiological data and genome sequencing reveals that nosocomial transmission of SARS-CoV-2 is underestimated and mostly mediated by a small number of highly infectious individuals. Lumley S F, Constantinides B, Sanderson N, et al.
https://www.sciencedirect.com/science/article/pii/S0163445321003777?via%3Dihub
- Changes in paediatric respiratory infections at a UK teaching hospital 2016–2021; impact of the SARS-CoV-2 pandemic. Lumley S F, Richens N, Lees E, et al.
https://www.sciencedirect.com/science/article/pii/S0163445321005405?via%3Dihub
- SARS-CoV-2 within-host diversity and transmission. Lythgoe K A, Hall M, Ferretti L et al.
https://www.science.org/doi/10.1126/science.abg0821
- Perspectives on COVID-19 testing policies and practices: a qualitative study with scientific advisors and NHS health care workers in England. Martindale A, Pilbeam C, Mableson H, et al.
https://bmcpublichealth.biomedcentral.com/articles/10.1186/s12889-021-11285-8
- Genomic network analysis of environmental and livestock F-type 1 plasmid populations. Matlock W, Chau K K, AbuOun M, et al.
https://www.nature.com/articles/s41396-021-00926-w
- Flanker: a tool for comparative genomics of gene flanking regions. Matlock W, Lipworth S, Constantinides B, et al.
https://www.nature.com/articles/s41396-021-00926-w
- Clarifying the evidence on SARS-CoV-2 antigen rapid tests in public health responses to COVID-19. Mina M J, Peto T E, Garcia-Finana M, et al.
https://www.sciencedirect.com/science/article/pii/S0140673621004256?via%3Dihub
- Public preferences for delayed or immediate antibiotic prescriptions in UK primary care: a choice experiment. Morrell L, Buchanan J, Roope L S J, et al.
https://journals.plos.org/plosmedicine/article?id=10.1371/journal.pmed.1003737
- Sociodemographic inequality in COVID-19 vaccination coverage among elderly adults in England: a national linked data study. Nafilyan V, Dolby T, Razieh C, et al.
https://bmjopen.bmj.com/content/11/7/e053402
- Improving local prevalence estimates of SARS-CoV-2 infections using a causal debiasing framework. Nicholson G, Lehmann B, Padellini T, et al.
https://www.nature.com/articles/s41564-021-01029-0
- Frequencies and patterns of microbiology test requests from primary care in Oxfordshire, UK, 2008–2018: a retrospective cohort study of electronic health records to inform point-of-care testing. Ordonez – Mena J M, Fanshawe T R, Foster D, et al.
https://bmjopen.bmj.com/content/11/11/e048527
- Diagnosis of SARS-CoV-2 Infection with LamPORE, a High-Throughput Platform Combining Loop-Mediated Isothermal Amplification and Nanopore Sequencing. Peto L, Rodger G, Carter D P, et al.
https://journals.asm.org/doi/10.1128/JCM.03271-20
- COVID-19: Rapid antigen detection for SARS-CoV-2 by lateral flow assay: A national systematic evaluation of sensitivity and specificity for mass-testing. Peto T.
https://www.sciencedirect.com/science/article/pii/S2589537021002042?via%3Dihub
- Effect of Delta variant on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK. Pouwels K B, Pritchard E, Matthews P C, et al.
https://www.nature.com/articles/s41591-021-01548-7
- Monitoring populations at increased risk for SARS-CoV-2 infection in the community using population-level demographic and behavioural surveillance. Pritchard E, Jones J, Vihta K, et al.
https://www.sciencedirect.com/science/article/pii/S2666776221002684?via%3Dihub
- Impact of vaccination on new SARS-CoV-2 infections in the United Kingdom. Pritchard E, Matthews P C, Stoesser N, et al.
https://www.nature.com/articles/s41591-021-01410-w
- Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae. Shaw L P, Chau K K, Kavanagh J, et al.
https://www.science.org/doi/10.1126/sciadv.abe3868
- Reduced neutralization of SARS-CoV-2 B.1.1.7 variant by convalescent and vaccine sera. Supasa P, Zhou D, Dejnirattisai W, et al.
https://www.sciencedirect.com/science/article/pii/S0092867421002221?via%3Dihub
- A haemagglutination test for rapid detection of antibodies to SARS-CoV-2. Townsend A, Rijal P, Xiao J, et al.
https://www.nature.com/articles/s41467-021-22045-y
- Ct threshold values, a proxy for viral load in community SARS-CoV-2 cases, demonstrate wide variation across populations and over time. Walker A S, Pritchard E, House T, et al.
https://elifesciences.org/articles/64683
- Tracking the Emergence of SARS-CoV-2 Alpha Variant in the United Kingdom. Walker A S, Vihta K, Gethings O, et al.
https://www.nejm.org/doi/full/10.1056/NEJMc2103227
- Supporting Primary Care Professionals to Stay in Work During the COVID-19 Pandemic: Views on Personal Risk and Access to Testing During the First Wave of Pandemic in Europe. Wanat M, Hoste M, Gobat N, et al.
https://www.frontiersin.org/articles/10.3389/fmed.2021.726319/full
- Perceptions on undertaking regular asymptomatic self-testing for COVID-19 using lateral flow tests: a qualitative study of university students and staff. Wanat M, Logan M, Hirst J A, et al.
https://bmjopen.bmj.com/content/11/9/e053850
- Time of Day of Vaccination Affects SARS-CoV-2 Antibody Responses in an Observational Study of Health Care Workers. Wang W, Balfe P, Eyre D W, et al.
https://journals.sagepub.com/doi/10.1177/07487304211059315
- Anti-spike antibody response to natural SARS-CoV-2 infection in the general population. Wei J, Matthews P C, Stoesser N, et al.
https://www.nature.com/articles/s41467-021-26479-2
- Antibody responses to SARS-CoV-2 vaccines in 45,965 adults from the general population of the United Kingdom. Wei J, Stoesser N, Matthews P C, et al.
https://www.nature.com/articles/s41564-021-00947-3
- An end-to-end heterogeneous graph attention network for Mycobacterium tuberculosis drug-resistance prediction. Yang Y, Walker T M, Kouchaki S, et al.
https://academic.oup.com/bib/article/22/6/bbab299/6355133
- Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the healthcare environment: a bacterial genome-wide association study. Young B C, Wu C, Charlesworth J, et al.
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000700
Papers published in 2022
HPRU Papers – 2022
- Antibody correlates of protection from SARS-CoV-2 reinfection prior to vaccination: A nested case-control within the SIREN study. Atti A, Insalata F, Otter A D, et all.
https://www.journalofinfection.com/article/S0163-4453(22)00535-7/fulltext
- Risk of Long COVID in People Infected With Severe Acute Respiratory Syndrome Coronavirus 2 After 2 Doses of a Coronavirus Disease 2019 Vaccine: Community-Based, Matched Cohort Study. Ayoubkhani D, Bosworth M L, King S, et al.
https://academic.oup.com/ofid/article/9/9/ofac464/6696170
- Trajectory of long covid symptoms after covid-19 vaccination: community based cohort study. Ayoubkhani D, Bermingham C, Pouwels K B, et al.
https://www.bmj.com/content/377/bmj-2021-069676
- Conducting rapid qualitative interview research during the COVID-19 pandemic – Reflections on methodological choices. Wanat M, Borek A J, Pilbeam C, et al.
https://www.frontiersin.org/articles/10.3389/fsoc.2022.953872/full
- Experiences and concerns of health workers throughout the first year of the COVID-19 pandemic in the UK: A longitudinal qualitative interview study. Borek A J, Pilbeam C, Mableson H, et al.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0264906
- How can behavioural science contribute to qualitative research on antimicrobial stewardship in primary care? Borek A J, Santillo M, Butler C C, et al.
https://academic.oup.com/jacamr/article/4/1/dlac007/6523943
- Predicting antibiotic resistance in complex protein targets using alchemical free energy methods. Brankin A, Fowler P W.
https://onlinelibrary.wiley.com/doi/10.1002/jcc.26979
- Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms. The CRyPTIC Consortium.
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3001755
- Systematic review of wastewater surveillance of antimicrobial resistance in human populations. Chau K K, Barker L, Budgell E P, et al.
https://www.sciencedirect.com/science/article/pii/S0160412022000976?via%3Dihub
- A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics. The CRyPTIC Consortium.
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3001721
- The importance of using whole genome sequencing and extended spectrum beta-lactamase selective media when monitoring antimicrobial resistance. Dugget N, AbuOun M, Randall L, et al.
https://www.nature.com/articles/s41598-020-76877-7
- Assessment of a vancomycin dosing guideline and identification of predictive factors associated with dose and drug trough levels. Gu Q, Jones N, Drennan P, et al.
https://www.journalofinfection.com/article/S0163-4453(22)00403-0/fulltext
- SARS-CoV-2 infectivity by viral load, S gene variants and demographic factors and the utility of lateral flow devices to prevent transmission. Lee L Y W, Rozmanowski S, Pang M, et al.
https://academic.oup.com/cid/article/74/3/407/6273394?login=false
- Effect of Covid-19 Vaccination on Transmission of Alpha and Delta Variants. Eyre D W, Taylor D, Purver M, et al.
https://www.nejm.org/doi/full/10.1056/nejmoa2116597
- BashTheBug: a crowd of volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates. Fowler P W, Wright C, Spiers, et al.
https://elifesciences.org/articles/75046
- Epidemiological cutoff values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis. The CRyPTIC Consortium.
https://erj.ersjournals.com/content/60/4/2200239
- Enhancing opportunistic recruitment and retention in primary care trials: lessons learned from a qualitative study embedded in the Cranberry for Urinary Tract Infection (CUTI) feasibility trial. Gbinigie O A, Boylan A, Butler C C, et al.
https://bmcprimcare.biomedcentral.com/articles/10.1186/s12875-022-01796-7
- Non-antibiotic treatment of acute urinary tract infection in primary care: a qualitative study. Gbinigie O A, Tonkin-Crine S, Butler C C, et al.
https://bjgp.org/content/72/717/e252
- Inferring risks of coronavirus transmission from community household data. House T, Riley H, Pellis L, et al.
https://journals.sagepub.com/doi/full/10.1177/09622802211055853
- ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads. Hunt M, Swann J, Constantinides B, et al.
https://academic.oup.com/bioinformatics/article/38/12/3291/6585329
- The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020. Knight G M, Mui Pham T, Stimson J, et al.
https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-022-07490-4
- An observational cohort study on the incidence of SARS-CoV-2 infection and B.1.1.7 variant infection in healthcare workers by antibody and vaccination status. Lumley S F, Rodger G, Constantinides, et al.
https://academic.oup.com/cid/article/74/7/1208/6314286
- K-mer based prediction of Clostridioides difficile relatedness and ribotypes. Moore M P, Wilcox M H, Walker A S, et al.
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000804
- Quantifying the primary and secondary effects of antimicrobial resistance on surgery patients: Methods and data sources for empirical estimation in England. Naylor N R, Evans S, Pouwels K B, et al.
https://www.frontiersin.org/articles/10.3389/fpubh.2022.803943/full
- Methodological and Ethical Considerations when Conducting Qualitative Interview Research With Healthcare Professionals: Reflections and Recommendations as a Result of a Pandemic. Pilbeam C, Anthierens S, Vanderslott, et al.
https://journals.sagepub.com/doi/10.1177/16094069221077763
- Primary care preparedness for the SARS-CoV-2 pandemic: a survey of NHS GPs. Family Practice. Pilbeam C, Edwards G, Tonkin-Crine S, et al.
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