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Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae
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Electronic application to improve management of infections in low-income neonatal units: pilot implementation of the NeoTree beta app in a public sector hospital in Zimbabwe
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STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies.
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Representing antibiotic relationships using measurements of efficacy against clinical isolates
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The phylogenetic range of bacterial and viral pathogens of vertebrates.
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Shaw LP. et al, (2020), Molecular ecology
Emergence of genomic diversity and recurrent mutations in SARS-CoV-2
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Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study.
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Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines
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The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples
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The flying bomb and the actuary
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Shaw LP. and Shaw LF., (2019), Significance, 16, 12 - 17
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes
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De Maio N. et al, (2019), Microbial Genomics, 5
Genomic diversity affects the accuracy of bacterial SNP calling pipelines
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Correction to: Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture.
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Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture.
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Rapid phenotypic evolution in multidrug-resistant Klebsiella pneumoniae hospital outbreak strains.
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Portable sequencing, genomic data, and scale in global emerging infectious disease surveillance.
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Shaw LP. and Sugden NC., (2018), Geo : geography and environment, 5
Modelling microbiome recovery after antibiotics using a stability landscape framework
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