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Publications

Drivers of methicillin-resistant Staphylococcus aureus (MRSA) lineage replacement in China

Chen H. et al, (2021), Genome Medicine, 13

Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae

Shaw LP. et al, (2021), Science Advances, 7, eabe3868 - eabe3868

Electronic application to improve management of infections in low-income neonatal units: pilot implementation of the NeoTree beta app in a public sector hospital in Zimbabwe

Gannon H. et al, (2021), BMJ Open Quality, 10, e001043 - e001043

No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2.

van Dorp L. et al, (2020), Nature communications, 11

STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies.

Bharucha T. et al, (2020), The Lancet. Infectious diseases, 20, e251 - e260

Representing antibiotic relationships using measurements of efficacy against clinical isolates

Shaw L., (2020), Wellcome Open Research, 4, 86 - 86

Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae

Shaw LP. et al, (2020)

The phylogenetic range of bacterial and viral pathogens of vertebrates.

Shaw LP. et al, (2020), Molecular ecology

Emergence of genomic diversity and recurrent mutations in SARS-CoV-2

van Dorp L. et al, (2020), Infection, Genetics and Evolution, 104351 - 104351

Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study.

Doyle RM. et al, (2020), Microbial genomics, 6

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

Bush SJ. et al, (2020), GigaScience, 9

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

Gweon HS. et al, (2019), Environmental Microbiome, 14

The flying bomb and the actuary

Shaw LP. and Shaw LF., (2019), Significance, 16, 12 - 17

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

De Maio N. et al, (2019), Microbial Genomics, 5

Genomic diversity affects the accuracy of bacterial SNP calling pipelines

Bush SJ. et al, (2019)

Correction to: Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture.

Nimmo C. et al, (2019), BMC genomics, 20

Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture.

Nimmo C. et al, (2019), BMC Genomics, 20

Rapid phenotypic evolution in multidrug-resistant Klebsiella pneumoniae hospital outbreak strains.

van Dorp L. et al, (2019), Microb Genom

Portable sequencing, genomic data, and scale in global emerging infectious disease surveillance.

Shaw LP. and Sugden NC., (2018), Geo : geography and environment, 5

Modelling microbiome recovery after antibiotics using a stability landscape framework

SHAW L. et al, ISME Journal

Include forthcoming?