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Contact information

Email
carlos.reding@ndm.ox.ac.uk

Website
https://rc-reding.gitlab.io/

ORCID
https://orcid.org/0000-0002-3469-9900

Research groups

Carlos Reding

PhD

Senior Bioinformatician

Hospital outbreak pipeline design
Clinical sample metagenomic analysis
Tracking spread of AMR genes

Collaborators

David Eyre

Professor of Infectious Diseases
Nicole Stoesser

Consultant in Infection (Oxford University Hospitals NHS Foundation Trust), NIHR Oxford Senior Research Fellow, Oxford Martin School Fellow
Bernadette Young

Consultant In Infection (OXFORD UNIVERSITY HOSPITALS NHS FOUNDATION TRUST)
(Ann) Sarah Walker

Professor of Medical Statistics and Epidemiology

Key publications

Hound: a novel tool for automated mapping of genotype to phenotype in bacterial genomes assembled de novo

Reding C. et al, (2024), Briefings in Bioinformatics, 25

Predicting the re-distribution of antibiotic molecules caused by inter-species interactions in microbial communities

Reding C., (2022), ISME Communications, 2

The Antibiotic Dosage of Fastest Resistance Evolution: Gene Amplifications Underpinning the Inverted-U

Reding C. et al, (2021), Molecular Biology and Evolution, 38, 3847 - 3863

The unconstrained evolution of fast and efficient antibiotic-resistant bacterial genomes

Reding-Roman C. et al, (2017), Nature Ecology & Evolution, 1

Using a Sequential Regimen to Eliminate Bacteria at Sublethal Antibiotic Dosages

Fuentes-Hernandez A. et al, (2015), PLOS Biology, 13, e1002104 - e1002104

Recent publications

Improving nitrofurantoin resistance prediction in Escherichia coli from whole-genome sequence by integrating NfsA/B enzyme assays

Dulyayangkul P. et al, (2024), Antimicrobial Agents and Chemotherapy, 68

Harvesting and amplifying gene cassettes confers cross-resistance to critically important antibiotics

Dulyayangkul P. et al, (2024), PLOS Pathogens, 20, e1012235 - e1012235

Genomic epidemiology of third-generation cephalosporin-resistant Escherichia coli from Argentinian pig and dairy farms reveals animal-specific patterns of co-resistance and resistance mechanisms

Mounsey O. et al, (2024), Applied and Environmental Microbiology

Improving Nitrofurantoin Resistance Prediction in Escherichia coli from Whole Genome Sequence by Integrating NfsA/B Enzyme Assays

Dulyayangkul P. et al, (2024)

Hound: a novel tool for automated mapping of genotype to phenotype in bacterial genomes assembled de novo

Reding C. et al, (2024), Briefings in Bioinformatics, 25

Harvesting and amplifying gene cassettes confers cross-resistance to critically important antibiotics

Dulyayangkul P. et al, (2023)

Hound: A novel tool for automated mapping of genotype to phenotype in bacterial genomes assembled de novo

Reding C. et al, (2023)

Genomic epidemiology of third-generation cephalosporin-resistant Escherichia coli from Argentinian pig and dairy farms reveals animal-specific patterns of co-resistance and resistance mechanisms

Mounsey O. et al, (2023)

Predicting the re-distribution of antibiotic molecules caused by inter-species interactions in microbial communities

Reding C., (2022), ISME Communications, 2

The Antibiotic Dosage of Fastest Resistance Evolution: Gene Amplifications Underpinning the Inverted-U

Reding C. et al, (2021), Molecular Biology and Evolution, 38, 3847 - 3863

Predicting the re-distribution of antibiotic molecules caused by inter-species interactions in microbial communities

Reding C., (2020)

Clinical Antibiotic Resistance Patterns Across 70 Countries

Catalan P. et al, (2020)

Plasmid carriage and the unorthodox use of fitness in microbiology

Reding C., (2019)

Fluorescence photography of patterns and waves of bacterial adaptation at high antibiotic doses

Reding C. et al, (2019)

The unconstrained evolution of fast and efficient antibiotic-resistant bacterial genomes

Reding-Roman C. et al, (2017), Nature Ecology & Evolution, 1

Using a Sequential Regimen to Eliminate Bacteria at Sublethal Antibiotic Dosages

Fuentes-Hernandez A. et al, (2015), PLOS Biology, 13, e1002104 - e1002104

Testing the optimality properties of a dual antibiotic treatment in a two-locus, two-allele model

Peña-Miller R. et al, (2014), Journal of The Royal Society Interface, 11, 20131035 - 20131035

More publications