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Search results (61)

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Quantitative drug susceptibility testing for Mycobacterium tuberculosis using unassembled sequencing data and machine learning

(2024), PLOS Computational Biology, 20, e1012260 - e1012260

MmpR5 protein truncation and bedaquiline resistance in Mycobacterium tuberculosis isolates from South Africa: a genomic analysis

Roberts LW. et al, (2024), The Lancet Microbe, 5, 100847 - 100847

Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny

Hunt M. et al, (2024)

Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach

Barilar I. et al, (2024), Nature Communications, 15

AllTheBacteria – all bacterial genomes assembled, available, and searchable

Hunt M. et al, (2024)

Rate variation and recurrent sequence errors in pandemic-scale phylogenetics

De Maio N. et al, (2024)

Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi

Ingle D. et al, (2024)

Hostile: accurate decontamination of microbial host sequences.

Constantinides B. et al, (2023), Bioinformatics (Oxford, England), 39

Bedaquiline and clofazimine resistance in Mycobacterium tuberculosis: an in-vitro and in-silico data analysis

Sonnenkalb L. et al, (2023), The Lancet Microbe, 4, e358 - e368

The 2021 WHO Catalogue of Mycobacterium Tuberculosis Complex Mutations Associated with Drug Resistance: A New Global Standard for Molecular Diagnostics

Walker TM. et al, (2023)

Hostile: accurate host decontamination of microbial sequences

Constantinides B. et al, (2023)

Repeated evolution of bedaquiline resistance in Mycobacterium tuberculosis is driven by truncation of mmpR5

Roberts LW. et al, (2022)

Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes

Hunt M. et al, (2022), Genome Biology, 23

Epidemiological cut-off values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis

(2022), European Respiratory Journal, 60, 2200239 - 2200239

High fluoroquinolone resistance proportions among multidrug-resistant tuberculosis driven by dominant L2 Mycobacterium tuberculosis clones in the Mumbai Metropolitan Region

Dreyer V. et al, (2022), Genome Medicine, 14

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