Jez Swann
Research Software Engineer
Jez is a Research Software Engineer who joined the group in 2016 after completing his PhD at the University of Leeds. He currently works on the HPC infrastructure, metadata databases and web interfaces that support the group’s Nanopore sequencing. He has also developed a variety of containers and bioinformatics pipelines for the group. Before joining the group, he has worked at the University of Leeds and Linköping University developing tools to allow interactive registration of 3D pathology and MRI volumes.
Recent publications
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High precision Neisseria gonorrhoeae variant and antimicrobial resistance calling from metagenomic Nanopore sequencing
Journal article
Sanderson ND. et al, (2020), Genome Research
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Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study
Journal article
Eyre DW. et al, (2020), eLife, 9
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Reconciling the Potentially Irreconcilable? Genotypic and Phenotypic Amoxicillin-Clavulanate Resistance in Escherichia coli.
Journal article
Davies TJ. et al, (2020), Antimicrobial agents and chemotherapy, 64
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Optimised use of Oxford Nanopore Flowcells for Hybrid Assemblies
Journal article
Lipworth S. et al, (2020)
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The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples
Journal article
Gweon HS. et al, (2019), Environmental Microbiomes, 14