{
    "items": [
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/1743082\" title=\"Nucleotide-resolution bacterial pan-genomics with reference graphs\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/1743082\">Nucleotide-resolution bacterial pan-genomics with reference graphs</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Preprint</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Colquhoun R. et al, (2020)</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.1101/2020.11.12.380378\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/1077510\" title=\"Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/1077510\">Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Journal article</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Hunt M. et al, (2019), Wellcome Open Research, 4, 191 - 191</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.12688/wellcomeopenres.15603.1\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/1077027\" title=\"Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/1077027\">Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Journal article</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Chewapreecha C. et al, (2019), Communications Biology, 2</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.1038/s42003-019-0678-x\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/1070058\" title=\"Exploring Plasmodium falciparum Var Gene Expression to Assess Host Selection Pressure on Parasites During Infancy\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/1070058\">Exploring Plasmodium falciparum Var Gene Expression to Assess Host Selection Pressure on Parasites During Infancy</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Journal article</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Kivisi CA. et al, (2019), Frontiers in Immunology, 10</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.3389/fimmu.2019.02328\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/1347249\" title=\"Genetic variation associated with infection and the environment in the accidental pathogen\n                  Burkholderia pseudomallei\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/1347249\">Genetic variation associated with infection and the environment in the accidental pathogen\n                  Burkholderia pseudomallei</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Preprint</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Chewapreecha C. et al, (2019)</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.1101/538793\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/823214\" title=\"Inferring synteny between genome assemblies: a systematic evaluation\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/823214\">Inferring synteny between genome assemblies: a systematic evaluation</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Journal article</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Liu D. et al, (2018), BMC Bioinformatics, 19</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.1186/s12859-018-2026-4\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/910678\" title=\"Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/910678\">Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Journal article</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">(2018), New England Journal of Medicine, 379, 1403 - 1415</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.1056/nejmoa1800474\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/1020258\" title=\"ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads.\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/1020258\">ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads.</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Journal article</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Hunt M. et al, (2017), Microbial genomics, 3</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.1099/mgen.0.000131\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/2068772\" title=\"Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing.\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/2068772\">Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing.</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Journal article</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Ludden C. et al, (2017), Microbial genomics, 3</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.1099/mgen.0.000114\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/2035652\" title=\"MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/2035652\">MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Journal article</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Protasio AV. et al, (2017), PLOS Neglected Tropical Diseases, 11, e0005559 - e0005559</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.1371/journal.pntd.0005559\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/1934255\" title=\"ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/1934255\">ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Preprint</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Hunt M. et al, (2017)</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.1101/118000\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/1737856\" title=\"Inferring synteny between genome assemblies: a systematic evaluation\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/1737856\">Inferring synteny between genome assemblies: a systematic evaluation</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Preprint</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Liu D. et al, (2017)</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.1101/149989\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/2068773\" title=\"Comparison of bacterial genome assembly software for MinION data and their applicability to medical microbiology.\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/2068773\">Comparison of bacterial genome assembly software for MinION data and their applicability to medical microbiology.</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Journal article</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Judge K. et al, (2016), Microbial genomics, 2</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.1099/mgen.0.000085\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/2068774\" title=\"Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data.\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/2068774\">Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data.</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Journal article</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Page AJ. et al, (2016), Microbial genomics, 2</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.1099/mgen.0.000083\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n", 
        "\n\n    <div class=\"listing-item listing-item-publication\" itemscope itemprop=\"itemListElement\" itemtype=\"http://schema.org/PublicationVolume\">\n\n        <div class=\"row\">\n\n            \n\n            <div class=\"col-xs-12\">\n                            \n                \n                    <div class=\"pull-right\">\n                        \n                    </div>\n                \n            \n                <h2 class=\"media-heading\">\n                    <a href=\"publication_modal/605899\" title=\"A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions\" data-toggle=\"modal\" data-target=\"#modal\" itemprop=\"name\" data-href=\"publication_modal/605899\">A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions</a>\n                </h2>\n  \n                \n                    <p class=\"categories-list\">\n                        \n                            <span class=\"label label-primary\">Journal article</span>\n                        \n                    </p>\n                \n\n                \n                \n                        \n                    <p itemprop=\"description\">Makendi C. et al, (2016), PLOS Neglected Tropical Diseases, 10, e0004446 - e0004446</p>\n                \n                        \n                \n                    <p>\n                        <div class=\"altmetric-embed\" data-badge-type=\"\" data-doi=\"10.1371/journal.pntd.0004446\" data-link-target=\"_blank\"></div>\n                    </p>\n                \n                \n            </div>\n\n        </div>\n\n    </div>\n\n\n"
    ], 
    "more": "\n\n    \n        <a href=\"https://www.expmedndm.ox.ac.uk/publications/search?b_start:int=45&amp;author=clme1945&amp;keywords=&amp;format=json&amp;random=b59bb266-abf2-4caa-84b7-9c6f207bfc98\" title=\"Load more\" class=\"btn btn-default load-more-button\">\n            Load More\n        </a>\n    \n\n", 
    "msg": ""
}