Publications
HPRU Papers
PAPERS PUBLISHED IN 2024
- Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach. The CRyPTIC Consortium.
https://www.nature.com/articles/s41467-023-44325-5
- Compensatory mutations are associated with increased in vitro growth in resistant clinical samples of Mycobacterium tuberculosis. Brunner, VM, Fowler, PW.
PAPERS PUBLISHED IN 2023
- The quality of vital signs measurements and value preferences in electronic medical records varies by hospital, specialty, and patient demographics. Jackson N, Woods J, Watkinson P, et al.
https://www.nature.com/articles/s41598-023-30691-z
- Protection against SARS-CoV-2 Omicron BA.4/5 variant following booster vaccination or breakthrough infection in the UK. Wei J, Matthews PC, Stoesser N, Newton JN, Diamond I, Studley R, et al.
https://www.nature.com/articles/s41467-023-38275-1
- Molnupiravir plus usual care versus usual care alone as early treatment for adults with COVID-19 at increased risk of adverse outcomes (PANORAMIC): an open-label, platform-adaptive randomised controlled trial. Butler CC, Hobbs FDR, Gbinigie OA, et al.
https://www.thelancet.com/journals/lancet/article/PIIS0140-6736(22)02597-1/fulltext
- Performance of antigen lateral flow devices in the UK during the alpha, delta, and omicron waves of the SARS-CoV-2 pandemic: a diagnostic and observational study. Eyre DW, Futschik M, Tunkel S, et al.
https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(23)00129-9/fulltext
- Comparison of R9.4.1/Kit10 and R10/Kit12 Oxford Nanopore flowcells and chemistries in bacterial genome reconstruction. Sanderson ND, Kapel N, Rodger G, Webster H, et al.
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000910
- A longitudinal study reveals persistence of antimicrobial resistance on livestock farms is not due to antimicrobial usage alone. Smith RP, May HE, AbuOun M, et al.
https://www.frontiersin.org/articles/10.3389/fmicb.2023.1070340/full
- Implementing antibiotic stewardship in high-prescribing English general practices: a mixed-methods study. Br J Gen Pract. Tonkin-Crine S, McLeod M, Borek AJ, et al.
https://bjgp.org/content/73/728/e164
- Microbial diversity and antimicrobial resistance in faecal samples from acute medical patients assessed through metagenomic sequencing. Yokoyama M, Peto L, Budgell EP, et al.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0282584
- Factors associated with plasmid antibiotic resistance gene carriage revealed using large-scale multivariable analysis. Orlek A, Anjum MF, Mather A, et al.
https://www.nature.com/articles/s41598-023-29530-y
- The burden and dynamics of hospital-acquired SARS-CoV-2 in England. Cooper BS, Evans S, Jafari Y, et al.
https://www.nature.com/articles/s41586-023-06634-z
- Evaluating the impact of testing strategies for the detection of nosocomial COVID-19 in English hospitals through data-driven modeling. Evans S, Stimson J, Pople D, Wilcox MH, Hope R, Robotham JV.
https://www.frontiersin.org/articles/10.3389/fmed.2023.1166074/full
- Stakeholders’ views and experiences on implementing new diagnostics in primary care to support management of community-acquired acute respiratory tract infections: a qualitative study. Hoste ME, Colman E, Wanat M, et al.
https://www.frontiersin.org/articles/10.3389/fpubh.2023.1216940/full
- In Impact of the COVID-19 pandemic on antimicrobial stewardship support for general practices in England: a qualitative interview study. Campbell A, Borek AJ, McLeod M, et al.
https://bjgpopen.org/content/7/3/BJGPO.2022.0193
- Re-examining advice to complete antibiotic courses: a qualitative study with clinicians and patients. Borek AJ, Edwards G, Santillo M, et al.
- Cycle threshold values as indication of increasing SARS-CoV-2 new variants, England, 2020–2022. Harrison RE, Hamada A, Haswell N, et al.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10521603/
- COVID-19 vaccination, risk-compensatory behaviours, and contacts in the UK. Buckell J, Jones J, Matthews PC, et al.
https://www.nature.com/articles/s41598-023-34244-2
- Protection against SARS-CoV-2 Omicron BA.4/5 variant following booster vaccination or breakthrough infection in the UK. Wei J, Matthews PC, Stoesser N, et al.
https://www.nature.com/articles/s41467-023-38275-1
- Health record hiccups-5,526 real-world time series with change points labelled by crowdsourced visual inspection. Quan TP, Lacey B, Peto TEA, Walker AS.
https://academic.oup.com/gigascience/article/doi/10.1093/gigascience/giad060/7232826
- Inclusion of minor alleles improves catalogue-based prediction of fluoroquinolone resistance in M. tuberculosis. Brankin AE, Fowler PW
https://academic.oup.com/jacamr/article/5/2/dlad039/7103433
- Hostile: accurate decontamination of microbial host sequences. Constantinides B, Hunt M, Crook D.
https://academic.oup.com/bioinformatics/article/39/12/btad728/7457481
- Effectiveness of BNT162b2 mRNA vaccine third doses and previous infection in protecting against SARS-CoV-2 infections during the Delta and Omicron variant waves; the UK SIREN cohort study September 2021 to February 2022. Hall VJ, Insalata F, Foulkes S, et al.
https://pubmed.ncbi.nlm.nih.gov/37926119/
- Demonstrating the learning and impact of embedding participant involvement in a pandemic research study: the experience of the SARS-CoV-2 immunity & reinfection evaluation (SIREN) study UK, 2020–2023. Howells, A., Aquino, E.N., Bose, D. et al.
https://researchinvolvement.biomedcentral.com/articles/10.1186/s40900-023-00506-6
- Antibody correlates of protection against Delta infection after vaccination: A nested case-control within the UK-based Siren Study. Atti, A., Insalata, F., Carr, E. J., et al.
https://linkinghub.elsevier.com/retrieve/pii/S0163445323003808
- A workflow for the detection of antibiotic residues, measurement of water chemistry and preservation of hospital sink drain samples for metagenomic sequencing. G Rodger, K Chau, P Aranega-Bou, et al.
https://www.journalofhospitalinfection.com/article/S0195-6701(23)00410-3/fulltext
- Model-based evaluation of admission screening strategies for the detection and control of carbapenemase-producing Enterobacterales in the English hospital setting. Pople D, Kypraios T, Donker T, et al.
https://bmcmedicine.biomedcentral.com/articles/10.1186/s12916-023-03007-1
PAPERS PUBLISHED IN 2022
- Mixed-methods evaluation of a behavioural intervention package to identify and amend incorrect penicillin allergy records in UK general practice. Wanat M, Santillo M, Galal U, Davoudianfar M, Bongard E, Savic S, et al.
- Molecular epidemiology and antimicrobial resistance phenotype of paediatric bloodstream infections caused by Gram-negative bacteria. Lipworth S, Vihta K, Davies T, et al.
https://www.nature.com/articles/s43856-022-00161-0
- Hospital outbreak of carbapenem-resistant Enterobacterales associated with a bla OXA-48 plasmid carried mostly by Escherichia coli ST399. Ledda A, Cummins M, Shaw LP, et al.
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000675
- Risk of Long COVID in People Infected With Severe Acute Respiratory Syndrome Coronavirus 2 After 2 Doses of a Coronavirus Disease 2019 Vaccine: Community-Based, Matched Cohort Study. Ayoubkhani D, Bosworth M L, King S, et al.
https://academic.oup.com/ofid/article/9/9/ofac464/6696170
- Trajectory of long covid symptoms after covid-19 vaccination: community based cohort study. Ayoubkhani D, Bermingham C, Pouwels K B, et al.
https://www.bmj.com/content/377/bmj-2021-069676
- Conducting rapid qualitative interview research during the COVID-19 pandemic – Reflections on methodological choices. Wanat M, Borek A J, Pilbeam C, et al.
https://www.frontiersin.org/articles/10.3389/fsoc.2022.953872/full
- How can behavioural science contribute to qualitative research on antimicrobial stewardship in primary care? Borek A J, Santillo M, Butler C C, et al.
https://academic.oup.com/jacamr/article/4/1/dlac007/6523943
- Predicting antibiotic resistance in complex protein targets using alchemical free energy methods. Brankin A, Fowler P W.
https://onlinelibrary.wiley.com/doi/10.1002/jcc.26979
- Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms. The CRyPTIC Consortium.
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3001755
- Systematic review of wastewater surveillance of antimicrobial resistance in human populations. Chau K K, Barker L, Budgell E P, et al.
https://www.sciencedirect.com/science/article/pii/S0160412022000976?via%3Dihub
- The importance of using whole genome sequencing and extended spectrum beta-lactamase selective media when monitoring antimicrobial resistance. Duggett N, AbuOun M, Randall L, et al.
https://www.nature.com/articles/s41598-020-76877-7
- Assessment[MW1] of an institutional guideline for vancomycin dosing and identification of predictive factors associated with dose and drug trough levels. Gu Q, Jones N, Drennan P, et al.
https://www.journalofinfection.com/article/S0163-4453(22)00403-0/fulltext
- Effect of Covid-19 Vaccination on Transmission of Alpha and Delta Variants. Eyre D W, Taylor D, Purver M, et al.
https://www.nejm.org/doi/full/10.1056/nejmoa2116597
- Epidemiological cutoff values for a 96-well broth microdilution plate for high-throughput research antibiotic susceptibility testing of M. tuberculosis. The CRyPTIC Consortium.
https://erj.ersjournals.com/content/60/4/2200239
- Enhancing opportunistic recruitment and retention in primary care trials: lessons learned from a qualitative study embedded in the Cranberry for Urinary Tract Infection (CUTI) feasibility trial. Gbinigie O A, Boylan A, Butler C C, et al.
https://bmcprimcare.biomedcentral.com/articles/10.1186/s12875-022-01796-7
- Non-antibiotic treatment of acute urinary tract infection in primary care: a qualitative study. Gbinigie O A, Tonkin-Crine S, Butler C C, et al.
https://bjgp.org/content/72/717/e252
- Inferring risks of coronavirus transmission from community household data. House T, Riley H, Pellis L, et al.
https://journals.sagepub.com/doi/full/10.1177/09622802211055853
- ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads. Hunt M, Swann J, Constantinides B, et al.
https://academic.oup.com/bioinformatics/article/38/12/3291/6585329
- The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020. Knight G M, Mui Pham T, Stimson J, et al.
https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-022-07490-4
- An observational cohort study on the incidence of SARS-CoV-2 infection and B.1.1.7 variant infection in healthcare workers by antibody and vaccination status. Lumley S F, Rodger G, Constantinides, et al.
https://academic.oup.com/cid/article/74/7/1208/6314286
- K-mer based prediction of Clostridioides difficile relatedness and ribotypes. Moore M P, Wilcox M H, Walker A S, et al.
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000804
- Quantifying the primary and secondary effects of antimicrobial resistance on surgery patients: Methods and data sources for empirical estimation in England. Naylor N R, Evans S, Pouwels K B, et al.
https://www.frontiersin.org/articles/10.3389/fpubh.2022.803943/full
- Methodological and Ethical Considerations when Conducting Qualitative Interview Research With Healthcare Professionals: Reflections and Recommendations as a Result of a Pandemic. Pilbeam C, Anthierens S, Vanderslott, et al.
https://journals.sagepub.com/doi/10.1177/16094069221077763
- Primary care preparedness for the SARS-CoV-2 pandemic: a survey of NHS GPs. Family Practice. Pilbeam C, Edwards G, Tonkin-Crine S, et al.
https://academic.oup.com/fampra/article/39/3/332/6454248
- Burden of SARS-CoV-2 infection in healthcare workers during second wave in England and impact of vaccines: prospective multicentre cohort study (SIREN) and mathematical model. Pople D, Monk E J M, Evans S, et al.
https://www.bmj.com/content/378/bmj-2022-070379
- Estimation of the impact of hospital-onset SARS-CoV-2 infections on length of stay in English hospitals using causal inference. Stimson J, Pouwels K B, Hope R, et al.
https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-022-07870-w
- daiquiri: Data Quality Reporting for Temporal Datasets. Quan T P
https://joss.theoj.org/papers/10.21105/joss.05034
- Health worker experiences of implementing TB infection prevention and control: A qualitative evidence synthesis to inform implementation recommendations. Van der Westhuizen H, Dorward J, Roberts N, et al.
https://journals.plos.org/globalpublichealth/article?id=10.1371/journal.pgph.0000292
- The experience of European hospital-based health care workers on following infection prevention and control procedures and their wellbeing during the first wave of the COVID-19 pandemic. Van Hout D, Hutchinson P, Wanat M, et al.
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0245182
- Symptoms and SARS-CoV-2 positivity in the general population in the UK. Vihta K, Pouwels K B, Peto T E A, et all.
https://academic.oup.com/cid/article/75/1/e329/6423489
- Antimicrobial resistance in commensal opportunistic pathogens isolated from non-sterile sites can be an effective proxy for surveillance in bloodstream infections. Vihta K, Gordon N C, Stoesser N, et al.
https://www.nature.com/articles/s41598-021-02755-5
- Omicron-associated changes in SARS-CoV-2 symptoms in the United Kingdom. Vihta K, Pouwels K B, Peto T E A, et al.
https://academic.oup.com/cid/advance-article/doi/10.1093/cid/ciac613/6653436
- Symptoms and SARS-CoV-2 positivity in the general population in the UK. Vihta K, Pouwels K B, Peto T E A, et al.
https://academic.oup.com/cid/article/75/1/e329/6423489
- Patients’ and clinicians’ perspectives on the primary care consultations for acute respiratory infections during the first wave of the COVID-19 pandemic: an eight-country qualitative study in Europe. Wanat M, Hoste M, Gobat N, et al.
https://bjgpopen.org/content/6/2/BJGPO.2021.0172
- The value, challenges and practical considerations of conducting qualitative research on antimicrobial stewardship in primary care. Wanat M, Santillo M, Borek A J, et al.
https://academic.oup.com/jacamr/article/4/2/dlac026/6551005
- Antibody responses and correlates of protection in the general population after two doses of the ChAdOx1 or BNT162b2 vaccines. Wei J, Pouwels K B, Stoesser N, et al.
https://www.nature.com/articles/s41591-022-01721-6
- SARS-CoV-2 antibody trajectories after a single COVID-19 vaccination with and without prior infection. Wei J, Matthews P C, Stoesser N, et al.
https://www.nature.com/articles/s41467-022-31495-x
- Eliciting risk preferences that predict risky health behaviour: A comparison of two approaches. Yang M, Roope L S J, Buchanan J, et al.
https://onlinelibrary.wiley.com/doi/10.1002/hec.4486
- Mortality risks associated with empirical antibiotic activity in E. coli bacteraemia: an analysis of electronic health records. Yoon C, Bartlett s, Stoesser N, et al.
https://academic.oup.com/jac/article/77/9/2536/6611841
PAPERS PUBLISHED IN 2021
- Management of penicillin allergy in primary care: a qualitative study with patients and primary care physicians. Wanat M, Anthierens S, Butler C, et al.
https://bmcprimcare.biomedcentral.com/articles/10.1186/s12875-021-01465-1
- A genomic epidemiological study shows that prevalence of antimicrobial resistance in Enterobacterales is associated with the livestock host, as well as antimicrobial usage. Abuoun M, Jones H, Stubberfield E et al.
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000630
- Prospective trial of different antimicrobial treatment durations for presumptive canine urinary tract infections. Allerton F, Pouwels K B, Bazelle J, et al.
https://bmcvetres.biomedcentral.com/articles/10.1186/s12917-021-02974-y
- Surveillance of Antibacterial Usage during the COVID-19 Pandemic in England, 2020. Andrews A, Budd E L, Hendrick A, et al.
https://www.mdpi.com/2079-6382/10/7/841
- Population-level faecal metagenomic profiling as a tool to predict antimicrobial resistance in Enterobacterales isolates causing invasive infections: An exploratory study across Cambodia, Kenya, and the UK. Auguet O, Niehus R, Gweon H, et al.
https://www.sciencedirect.com/science/article/pii/S2589537021001905?via%3Dihub
- Development of an intervention to support the implementation of evidence-based strategies for optimising antibiotic prescribing in general practice. Borek A J, Campbell A, Dent E, et al.
https://implementationsciencecomms.biomedcentral.com/articles/10.1186/s43058-021-00209-7
- Implementing interventions to reduce antibiotic use: a qualitative study in high-prescribing practices. Borek A J, Campbell A, Dent E, et al.
https://bmcprimcare.biomedcentral.com/articles/10.1186/s12875-021-01371-6
- Impact of the COVID-19 pandemic on community antibiotic prescribing and stewardship: A qualitative interview study with general practitioners in England. Borek A J, Maitland K, MeLeod M, et al.
https://www.mdpi.com/2079-6382/10/12/1531
- Preferences for Medical Consultations from Online Providers: Evidence from a Discrete Choice Experiment in the United Kingdom. Buchanan J, Roope L S J, Morrell L, et al.
https://link.springer.com/article/10.1007/s40258-021-00642-8
- Probabilistic transmission models incorporating sequencing data for healthcare-associated Clostridioides difficile outperform heuristic rules and identify strain-specific differences in transmission. Eyre D W, Laager M, Walker A S, et al.
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008417
- Quantitative SARS-CoV-2 anti-spike responses to Pfizer–BioNTech and Oxford–AstraZeneca vaccines by previous infection status. Eyre D W, Lumley S F, Wei J. et al.
https://www.sciencedirect.com/science/article/pii/S1198743X21002895?via%3Dihub
- Feasibility and Acceptability of Community Coronavirus Disease 2019 Testing Strategies (FACTS) in a University Setting. Hirst J, Logan M, Fanshawe T R, et al.
https://academic.oup.com/ofid/article/8/12/ofab495/6380918
- Utility of Whole Genome Sequencing in Assessing and Enhancing Partner Notification of Neisseria gonorrhoeae Infection. Kong L Y, Wilson J D, Moura I B, et al.
- Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infectivity by Viral Load, S Gene Variants and Demographic Factors, and the Utility of Lateral Flow Devices to Prevent Transmission. Lee L Y W, Rozmanowski S, Pang M, et al.
https://academic.oup.com/cid/article/74/3/407/6273394
- Ten years of population-level genomic Escherichia coli and Klebsiella pneumoniae serotype surveillance informs vaccine development for invasive infections. Lipworth S, Vihta K, Chau K K, et al.
https://academic.oup.com/cid/article/74/3/407/6273394
- Epidemiology of Mycobacterium abscessus in England: an observational study. Lipworth S, Hough N, Weston N, et al.
https://www.sciencedirect.com/science/article/pii/S2666524721001282?via%3Dihub
- Antimicrobial resistance genes and clonal success in Escherichia coli isolates causing bloodstream infection. Lipworth S, Peto T EA, Crook D W, et al.
https://www.sciencedirect.com/science/article/pii/S2666524721001518?via%3Dihub
- Ten-year longitudinal molecular epidemiology study of Escherichia coli and Klebsiella species bloodstream infections in Oxfordshire, UK. Lipworth S, Vihta K, Barker L, et al.
https://genomemedicine.biomedcentral.com/articles/10.1186/s13073-021-00947-2
- The Duration, Dynamics, and Determinants of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Antibody Responses in Individual Healthcare Workers. Lumley S F, Wei J, O’Donnell D, et al.
https://academic.oup.com/cid/article/73/3/e699/6064824
- Antibody Status and Incidence of SARS-CoV-2 Infection in Health Care Workers. Lumley S F, O’Donnell D, Stoesser N E, et al.
https://www.nejm.org/doi/10.1056/NEJMoa2034545
- Epidemiological data and genome sequencing reveals that nosocomial transmission of SARS-CoV-2 is underestimated and mostly mediated by a small number of highly infectious individuals. Lumley S F, Constantinides B, Sanderson N, et al.
https://www.sciencedirect.com/science/article/pii/S0163445321003777?via%3Dihub
- Changes in paediatric respiratory infections at a UK teaching hospital 2016–2021; impact of the SARS-CoV-2 pandemic. Lumley S F, Richens N, Lees E, et al.
https://www.sciencedirect.com/science/article/pii/S0163445321005405?via%3Dihub
- Perspectives on COVID-19 testing policies and practices: a qualitative study with scientific advisors and NHS health care workers in England. Martindale A, Pilbeam C, Mableson H, et al.
https://bmcpublichealth.biomedcentral.com/articles/10.1186/s12889-021-11285-8
- Genomic network analysis of environmental and livestock F-type 1 plasmid populations. Matlock W, Chau K K, AbuOun M, et al.
https://www.nature.com/articles/s41396-021-00926-w
- Flanker: a tool for comparative genomics of gene flanking regions. Matlock W, Lipworth S, Constantinides B, et al.
https://www.nature.com/articles/s41396-021-00926-w
- Public preferences for delayed or immediate antibiotic prescriptions in UK primary care: a choice experiment. Morrell L, Buchanan J, Roope L S J, et al.
https://journals.plos.org/plosmedicine/article?id=10.1371/journal.pmed.1003737
- Sociodemographic inequality in COVID-19 vaccination coverage among elderly adults in England: a national linked data study. Nafilyan V, Dolby T, Razieh C, et al.
https://bmjopen.bmj.com/content/11/7/e053402
- Improving local prevalence estimates of SARS-CoV-2 infections using a causal debiasing framework. Nicholson G, Lehmann B, Padellini T, et al.
https://www.nature.com/articles/s41564-021-01029-0
- Diagnosis of SARS-CoV-2 Infection with LamPORE, a High-Throughput Platform Combining Loop-Mediated Isothermal Amplification and Nanopore Sequencing. Peto L, Rodger G, Carter D P, et al.
https://journals.asm.org/doi/10.1128/JCM.03271-20
- COVID-19: Rapid antigen detection for SARS-CoV-2 by lateral flow assay: A national systematic evaluation of sensitivity and specificity for mass-testing. Peto T.
https://www.sciencedirect.com/science/article/pii/S2589537021002042?via%3Dihub
- Effect of Delta variant on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK. Pouwels K B, Pritchard E, Matthews P C, et al.
https://www.nature.com/articles/s41591-021-01548-7
- Monitoring populations at increased risk for SARS-CoV-2 infection in the community using population-level demographic and behavioural surveillance. Pritchard E, Jones J, Vihta K, et al.
https://www.sciencedirect.com/science/article/pii/S2666776221002684?via%3Dihub
- Impact of vaccination on new SARS-CoV-2 infections in the United Kingdom. Pritchard E, Matthews P C, Stoesser N, et al.
https://www.nature.com/articles/s41591-021-01410-w
- Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae. Shaw L P, Chau K K, Kavanagh J, et al.
https://www.science.org/doi/10.1126/sciadv.abe3868
- Ct threshold values, a proxy for viral load in community SARS-CoV-2 cases, demonstrate wide variation across populations and over time. Walker A S, Pritchard E, House T, et al.
https://elifesciences.org/articles/64683
- Tracking the Emergence of SARS-CoV-2 Alpha Variant in the United Kingdom. Walker A S, Vihta K, Gethings O, et al.
https://www.nejm.org/doi/full/10.1056/NEJMc2103227
- Supporting Primary Care Professionals to Stay in Work During the COVID-19 Pandemic: Views on Personal Risk and Access to Testing During the First Wave of Pandemic in Europe. Wanat M, Hoste M, Gobat N, et al.
https://www.frontiersin.org/articles/10.3389/fmed.2021.726319/full
- Perceptions on undertaking regular asymptomatic self-testing for COVID-19 using lateral flow tests: a qualitative study of university students and staff. Wanat M, Logan M, Hirst J A, et al.
https://bmjopen.bmj.com/content/11/9/e053850
- Anti-spike antibody response to natural SARS-CoV-2 infection in the general population. Wei J, Matthews P C, Stoesser N, et al.
https://www.nature.com/articles/s41467-021-26479-2
- Antibody responses to SARS-CoV-2 vaccines in 45,965 adults from the general population of the United Kingdom. Wei J, Stoesser N, Matthews P C, et al.
https://www.nature.com/articles/s41564-021-00947-3
- An end-to-end heterogeneous graph attention network for Mycobacterium tuberculosis drug-resistance prediction. Yang Y, Walker T M, Kouchaki S, et al.
https://academic.oup.com/bib/article/22/6/bbab299/6355133
- Antimicrobial resistance determinants are associated with Staphylococcus aureus bacteraemia and adaptation to the healthcare environment: a bacterial genome-wide association study. Young B C, Wu C, Charlesworth J, et al.
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000700
PAPERS PUBLISHED IN 2020
- Social and contextual influences on antibiotic prescribing and antimicrobial stewardship: A qualitative study with clinical commissioning group and general practice professionals. Borek AJ, Anthierens S, Allison R, et al
https://www.mdpi.com/2079-6382/9/12/859
- Evaluation of methods for detecting human reads in microbial sequencing datasets. Bush S J, Connor T R, Peto T E A, et al
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000393
- Read trimming has minimal effect on bacterial SNP-calling accuracy. Bush S J
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000434
- Genomic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients. Constantinides B, Chau K K, Quan T P et al
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000391
- Differential occupational risks to healthcare workers from SARS-CoV-2: A prospective observational study. Eyre D W, Lumley S F, O’Donnell D, et al
https://elifesciences.org/articles/60675
- Assessing a novel, lab-free, point-of-care test for SARS-CoV-2 (CovidNudge): a diagnostic accuracy study. Gibani M M, Toumazou C, Sohbati M et al
https://www.sciencedirect.com/science/article/pii/S266652472030121X?via%3Dihub
- Delayed antibiotic prescription by general practitioners in the UK: a stated-choice study. Morrell L, Buchanan J, Roope L S J, et al
https://www.mdpi.com/2079-6382/9/9/608
- Risk factors associated with carbapenemase-producing enterobacterales (CPE) positivity in the hospital wastewater environment. Park S C, Parikh H, Vegesana K, et al
https://journals.asm.org/doi/10.1128/AEM.01715-20
- Performance characteristics of five immunoassays for SARS-CoV-2: a head-to-head benchmark comparison. The National SARS-CoV-2 Serology Assay evaluation Group.
https://www.sciencedirect.com/science/article/pii/S1473309920306344?via%3Dihub
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